PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002828.1_g330.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 808aa MW: 93123.8 Da PI: 9.8997

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002828.1_g330.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.5	4.6e-18	41	122	4	90
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 n+YA + GFs+rk + ++ +++ +i +r++ Csk+g+ ++ + + ++ trtgC a+++ + e d++w++++l+l+HnH Pav_sc0002828.1_g330.1.br 41 NSYALKKGFSIRKGNIRRDTKS-NIRQRDYLCSKQGFYDDFGQV---KTAHKLDTRTGCMARIRFTVE-DKVWKISHLNLDHNH 119 89***********9999555.5**********998877...889999**********9.************* PP FAR1 88 ela 90 e+a Pav_sc0002828.1_g330.1.br 120 ECA 122 975 PP

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence
MESDCQKEKL ETNKEEKLFE GDELREGMEV CNEVEAYNLC NSYALKKGFS IRKGNIRRDT 60 KSNIRQRDYL CSKQGFYDDF GQVKTAHKLD TRTGCMARIR FTVEDKVWKI SHLNLDHNHE 120 CAKPEERQFL KSGRKIRKVH ANVMSSMVEA DEDKAMANAI EIVFPHTRHR LCTWHIAKNA 180 TQPLAGLYTN PEFSKQFNKC FYGCFSESEF QATWDNMINT FKLENHSWLQ KLYSLRKKWC 240 SAFNLDYFSA NIRATQRVES TNNIFHQIST KTMTLTSFVH HYEQKTVDMR LAELEEDFRC 300 KNGMPYLKAK SGIFKQAAGE YTIKMFSFFE KELLGCFEVR LVEVCNSGPE YVFEAIEEGH 360 ERVYIIHFNS STSKISCSCK LFESKGLLCR HALKVFDSKN ITSLPSQYIL KRWTKRVKKE 420 IVVSSDLCES SNKKEKSVQS LCLSELMHEV NDVVSIASFS DSRTRLVKQK LAEVKLLLER 480 DMETARAKKN LNNIDDQNVH DVVSDKPPVL NPPTIRAKGI TNARIKSNME KKRKKDKRKD 540 GRVGNSSQVS RPTTVTARYF KPYFWTSKLS LENVGFTKKD CLNYLHRKKE EMIEGGDAES 600 LINHFKYKQA IHFNSSTSKI SCSCKLFESK GLLCRHALKV FDSKNITSLP SQYILKRWTK 660 RVKKEIVVSS DLCESSNKKE KSVQSLCLSE LMHEVNDVVS IASFSDSRTR LVKQKLAEVK 720 LLLERDMETA RAKKNLNNID DQNVHDVVSD KPPVLNPPTI RAKGITNARI KSNMEKKRKK 780 DKRKDGRVGN SSQVSRPTTV TASKNSFI

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence

MESDCQKEKL ETNKEEKLFE GDELREGMEV CNEVEAYNLC NSYALKKGFS IRKGNIRRDT  60
KSNIRQRDYL CSKQGFYDDF GQVKTAHKLD TRTGCMARIR FTVEDKVWKI SHLNLDHNHE  120
CAKPEERQFL KSGRKIRKVH ANVMSSMVEA DEDKAMANAI EIVFPHTRHR LCTWHIAKNA  180
TQPLAGLYTN PEFSKQFNKC FYGCFSESEF QATWDNMINT FKLENHSWLQ KLYSLRKKWC  240
SAFNLDYFSA NIRATQRVES TNNIFHQIST KTMTLTSFVH HYEQKTVDMR LAELEEDFRC  300
KNGMPYLKAK SGIFKQAAGE YTIKMFSFFE KELLGCFEVR LVEVCNSGPE YVFEAIEEGH  360
ERVYIIHFNS STSKISCSCK LFESKGLLCR HALKVFDSKN ITSLPSQYIL KRWTKRVKKE  420
IVVSSDLCES SNKKEKSVQS LCLSELMHEV NDVVSIASFS DSRTRLVKQK LAEVKLLLER  480
DMETARAKKN LNNIDDQNVH DVVSDKPPVL NPPTIRAKGI TNARIKSNME KKRKKDKRKD  540
GRVGNSSQVS RPTTVTARYF KPYFWTSKLS LENVGFTKKD CLNYLHRKKE EMIEGGDAES  600
LINHFKYKQA IHFNSSTSKI SCSCKLFESK GLLCRHALKV FDSKNITSLP SQYILKRWTK  660
RVKKEIVVSS DLCESSNKKE KSVQSLCLSE LMHEVNDVVS IASFSDSRTR LVKQKLAEVK  720
LLLERDMETA RAKKNLNNID DQNVHDVVSD KPPVLNPPTI RAKGITNARI KSNMEKKRKK  780
DKRKDGRVGN SSQVSRPTTV TASKNSFI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	531	535	KKRKK
2	776	780	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-48	FAR1 family protein