PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002613.1_g130.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 624aa    MW: 71996 Da    PI: 6.7916
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002613.1_g130.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.91.1e-25108196290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k    r++ra+tr gCka+++vk +k++kw++tk+ ++H
  Pav_sc0002613.1_g130.1.mk 108 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRASTREGCKAMIHVKYDKSSKWVITKFIKDH 191
                                9**************************************99999998************************************* PP

                       FAR1  86 nHela 90 
                                nH+l+
  Pav_sc0002613.1_g130.1.mk 192 NHPLV 196
                                ***96 PP
2FAR152.51.7e-16265347290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                fY++YA+++GF +r+ +s+ks+r+g+i++r + C     + ++        +++  +r  C+a++ +++ek g w+v+k+ ++H
  Pav_sc0002613.1_g130.1.mk 265 FYDDYASRLGFLTRVLSSRKSERDGSIISRGLGCRGVSDNGRKVM------QKECGQREFCTAMVLLRQEKPGSWVVKKFLKDH 342
                                9*********************************87766666554......488999*************************** PP

                       FAR1  86 nHela 90 
                                nH+l+
  Pav_sc0002613.1_g130.1.mk 343 NHPLV 347
                                ***96 PP
3FAR183.82.7e-26451542191
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                                +fY+ Y++++GF++r++++++s +++ i+ r+fvCskeg+r+e+    +++ + +r+ tr gC+a+l+++ ++ gkw+++ +++
  Pav_sc0002613.1_g130.1.mk 451 DFYEMYGRHMGFTIRNNRTRRSLKDNAIIGREFVCSKEGFRAEKYAMsQNRVHPSRPATRKGCNAMLRITAKDGGKWVIYGFVK 534
                                6*********************9********************9888234444599**************************** PP

                       FAR1  84 eHnHelap 91 
                                eHnHel+p
  Pav_sc0002613.1_g130.1.mk 535 EHNHELNP 542
                                *****975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    
IHHKLELKTT SLEVTICLLS WPDVVYVFEK EKDQTKHSHF EAFTSQRNFH SRPENEDLLS  60
LLESMDSDEG ARAVESSSSQ ALVLYEADSI LEPYEGMEFE SEDAAKIFYD EYARRVGFVM  120
RVMSCRRSER DGRILARRLG CNKEGHCVSI RGKFGPVRKP RASTREGCKA MIHVKYDKSS  180
KWVITKFIKD HNHPLVVSPR EARQTMIGSF RNIDSLCIEM EVQMDDQNGT TYTSEGGETN  240
IIEVSTNQEP YEGMLFESED AARVFYDDYA SRLGFLTRVL SSRKSERDGS IISRGLGCRG  300
VSDNGRKVMQ KECGQREFCT AMVLLRQEKP GSWVVKKFLK DHNHPLVVQS QKSRRTLDVE  360
DHNNHLSIKL QSVFDNLKVL EAKTVGQGFS PERNYRCWLD ETFSSHETAD DELSYTPDVD  420
NNLIETSSQD FSLTLEPVIG MEFESAEDAR DFYEMYGRHM GFTIRNNRTR RSLKDNAIIG  480
REFVCSKEGF RAEKYAMSQN RVHPSRPATR KGCNAMLRIT AKDGGKWVIY GFVKEHNHEL  540
NPNKIPPRRS HRIAFCEDEK DLKIRELSTE LHREKKKSAA YQEKLQIVLK YIEEHTQRLS  600
LKVELATNNM RELESEEQDS SYSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-71FAR1 family protein