PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002574.1_g150.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WOX
Protein Properties Length: 180aa    MW: 20440 Da    PI: 9.7132
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002574.1_g150.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.8e-213091157
                               TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               ++ R+++t+eq+++L +lF++  r+ps++++++++++l    +++ ++V++WFqN++a+e++
  Pav_sc0002574.1_g150.1.mk 30 KCGRWNPTTEQVKVLTDLFRSgLRTPSTDQIQKISSQLsfygKIESKNVFYWFQNHKARERQ 91
                               568*****************99**************************************97 PP
2Wus_type_Homeobox114.65e-373093265
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+
  Pav_sc0002574.1_g150.1.mk 30 KCGRWNPTTEQVKVLTDLFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKR 93
                               678***********************************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MDEGMSGFCI KAASFRGSGG GGGNGNNGTK CGRWNPTTEQ VKVLTDLFRS GLRTPSTDQI  60
QKISSQLSFY GKIESKNVFY WFQNHKARER QKRRKVSIDD KDFTRRDQDK ISSPKQLNQV  120
SGPARVIETL QLFPVNSFDE SEAEKMRFHA NEYCKEATAF AYRVGTEMDH PPLDLRLSFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.12e-62WOX family protein