PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002574.1_g050.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 290aa    MW: 32973.8 Da    PI: 6.7315
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002574.1_g050.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-082469346
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                WT+eE +++  a +++  +   +W ++a++++ g+t  +++  +q 
  Pav_sc0002574.1_g050.1.mk 24 EWTKEENKKFESALAMFDEKtpdRWLKVAEMIP-GKTVIDVIKQYQE 69
                               7********************************.*********9996 PP
2Myb_DNA-binding38.33.1e-12124168347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  Pav_sc0002574.1_g050.1.mk 124 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVISKTPTQVASHAQKY 168
                                7*****************************789***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
METLYPASYM ADSNWFIQDS QSSEWTKEEN KKFESALAMF DEKTPDRWLK VAEMIPGKTV  60
IDVIKQYQEL EEDVSEIESG RFPIPGYLTS SFTLDLGDDR NFDANRKRPS AARGSDQERK  120
KGIPWTEEEH RRFLMGLLKY GKGDWRNISR NFVISKTPTQ VASHAQKYFM RQHSGGKDKR  180
RPSIHDITTV NLTNTTPSEN NRPPLDQSPP EQKSTESPKA LLDWNACDDG GAMVFGSTHG  240
SLFESSPYDV AAEGIKLQLQ KLYSSANFAA HAKPQNSMYL MQTSRHQIHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-94MYB family protein