PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002544.1_g050.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 259aa    MW: 28198.7 Da    PI: 8.3445
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002544.1_g050.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.47e-312103197
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg+
  Pav_sc0002544.1_g050.1.mk   2 SCNGCRVLRKGCSESCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTVNPVNGAVGL 85 
                                6*********************************************************************************** PP

                     DUF260  80 ilklqqqleqlkaelall 97 
                                +++++++++q+++e++l+
  Pav_sc0002544.1_g050.1.mk  86 LWTGNWHVCQAAVETVLR 103
                                ************998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MSCNGCRVLR KGCSESCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR  60
PVLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPI PELLGCGSTP  120
DEASDADGGV VNNCTDMWRL RDPSHNSGSS SRFTSSRSAK ASSPKRKRSA DDESPTKVLQ  180
LQHHADLDLR LGAEMDFKEK RAALQNWSSA VYEHKPTWHG EGHETSRDLS LNRRNVQITK  240
ASTSSNAPIS LTQTPSAFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-77LBD family protein