PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002358.1_g040.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 376aa MW: 41438.6 Da PI: 7.0687

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002358.1_g040.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.1	1.9e-31	55	195	2	132
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas 83 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +ak++i+el+ ++ +++ ++ ++ s + ++s Pav_sc0002358.1_g040.1.mk 55 FGGKDRHSKVCTVKGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDAAKHEIDELPPLPLPPSGNFglNHPSLVLTSS 138 689*************************************************************77777444332222222222 PP TCP 84 nsssg..................................kaaksaakskksqksaasalnlakesrakarararertrekmri 132 + ++ + k+++ ar+ t+e+ Pav_sc0002358.1_g040.1.mk 139 HGVQThahaqlshdngegpsggiaparshfwstnsdaiwR--------------------------GKSKEIARDTTNEEEEE 195 1111121122222222222333333332332222222220..........................33333344433333332 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MIKSPNEADL QEAAGNSSRD DQANKFSTKA NDLSRPSTPW LRLKDPRIVR VSRAFGGKDR 60 HSKVCTVKGL RDRRVRLSVP TAIQLYDLQE RLGLNQPSKV VDWLLDAAKH EIDELPPLPL 120 PPSGNFGLNH PSLVLTSSHG VQTHAHAQLS HDNGEGPSGG IAPARSHFWS TNSDAIWRGK 180 SKEIARDTTN EEEEENQKDI STGSDQKEEG TVDGNSSSNN FLTRISTNHP FFPGLVNNAM 240 PYAYHNWDHN QPSNFTLSQL GSHGFPSQTA DLHNFINVVS LPSTLSLSTT QSYFPSHNAA 300 AAAEIDPRQF NHMHMLSSSS TSQNLLPNSL SPTLYPNSQT LRAPHLSMMT KLVRSSNNTT 360 GIDHHQPNTD QESPSR

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MIKSPNEADL QEAAGNSSRD DQANKFSTKA NDLSRPSTPW LRLKDPRIVR VSRAFGGKDR  60
HSKVCTVKGL RDRRVRLSVP TAIQLYDLQE RLGLNQPSKV VDWLLDAAKH EIDELPPLPL  120
PPSGNFGLNH PSLVLTSSHG VQTHAHAQLS HDNGEGPSGG IAPARSHFWS TNSDAIWRGK  180
SKEIARDTTN EEEEENQKDI STGSDQKEEG TVDGNSSSNN FLTRISTNHP FFPGLVNNAM  240
PYAYHNWDHN QPSNFTLSQL GSHGFPSQTA DLHNFINVVS LPSTLSLSTT QSYFPSHNAA  300
AAAEIDPRQF NHMHMLSSSS TSQNLLPNSL SPTLYPNSQT LRAPHLSMMT KLVRSSNNTT  360
GIDHHQPNTD QESPSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	5e-43	TCP family protein