PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0002271.1_g350.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 552aa MW: 62659.4 Da PI: 8.2123 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 298.7 | 1.5e-91 | 167 | 548 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 l++ Ll A+av++++ + a + L++l + +s gd++qR++ayf+ +Laarl+ s ++ + ++t s+ee+ +++ + Pav_sc0002271.1_g350.1.mk 167 LIHMLLITATAVNENNVSSALENLSELYKSVSLCGDSVQRVVAYFADGLAARLLTRKSPFFDMIMKEPT----SAEEFVSFTSL 246 6899***************************************************99999988877777....5888899999* PP GRAS 85 sevsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleet 161 + vsP+++f+h+taNqaI ea+e+e +++H+iDfd+s+G+QWp+L+q+L++++ ++ slRiTg+g+ s +el+et Pav_sc0002271.1_g350.1.mk 247 YRVSPYYQFAHFTANQAIIEAFEKEeeknnRALHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGQ----SLDELRET 326 ***********************9977777788**********************99755566*********....9******* PP GRAS 162 gerLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244 ++rL +f + + ++ fef+ l l +l +Lr k++E++aVnlv++l +l +s+++++ Lk v l+P +v++veq Pav_sc0002271.1_g350.1.mk 327 ENRLMSFSKGFrNLIFEFQGL----LRGSKLINLRKKRNETIAVNLVFHLNTLS-NSLKISD----SLKSVHLLNPSIVILVEQ 401 *********97579******8....66667789*****************9997.6666666....9***************** PP GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpv 327 e +++ sFl rf+e+l+y++a+fdsl+ lpres er ++E+ lg+ei++++ +++ + e++e+W+ r+e+ GF+ + Pav_sc0002271.1_g350.1.mk 402 EGSRSPRSFLSRFMESLHYFAAMFDSLDDCLPRESAERLSIEKNHLGKEIKSMLNYDNDDvNCSKIEKMETWKTRMESHGFEGI 485 ********************************************************9999788999****************** PP GRAS 328 plsekaakqaklllrkvk...sdgyrveee.............sgslv.lgWkdrpLvsvSaW 373 +ls+k qa+lll+ ++ e++ +g + lgW+dr L++vSaW Pav_sc0002271.1_g350.1.mk 486 NLSSKSKIQARLLLKIRThycPLQFEGESSggstagfkvfergDGRTIsLGWQDRYLLTVSAW 548 *************975441121223333225555555566667555556************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence |
MSNITTKVAC RGLSRFATFS LSRALSTATS ANETRTQKLE RIADELLDLT KIERHDYSIL 60 FRLKMGLNRY GPARDGGDGD TCREMEGIDE EELLNLSLAI VTTSGGERLK KRERRDHKNV 120 LVSPLNSYEG CEGKIFRLLQ MREQMLKQDH KKKGAHVLDE DGKGLHLIHM LLITATAVNE 180 NNVSSALENL SELYKSVSLC GDSVQRVVAY FADGLAARLL TRKSPFFDMI MKEPTSAEEF 240 VSFTSLYRVS PYYQFAHFTA NQAIIEAFEK EEEKNNRALH VIDFDVSYGF QWPSLIQSLS 300 EKATSGNRIS LRITGFGQSL DELRETENRL MSFSKGFRNL IFEFQGLLRG SKLINLRKKR 360 NETIAVNLVF HLNTLSNSLK ISDSLKSVHL LNPSIVILVE QEGSRSPRSF LSRFMESLHY 420 FAAMFDSLDD CLPRESAERL SIEKNHLGKE IKSMLNYDND DVNCSKIEKM ETWKTRMESH 480 GFEGINLSSK SKIQARLLLK IRTHYCPLQF EGESSGGSTA GFKVFERGDG RTISLGWQDR 540 YLLTVSAWNC VP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 5e-51 | GRAS family protein |