PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0002264.1_g160.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 259aa MW: 29757.1 Da PI: 8.6743 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.8 | 1.1e-20 | 31 | 119 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn YA ++GF + s++++ + +ge+t++++vC k+g++ +++ + ++rr+r trtgCkakl + k + ++k+ v +++ Pav_sc0002264.1_g160.1.br 31 NFYNMYAAKAGFGIHCSTTSTCTFTGEVTRKEYVCCKQGYALTSTIS--RKRRQRGCTRTGCKAKLAILKVNeKNKYTVVGFNE 112 6*****************************************99888..9*****************988877*********** PP FAR1 84 eHnHela 90 HnH+++ Pav_sc0002264.1_g160.1.br 113 VHNHDMT 119 ****986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MECEGQVTLE VSSELKSKLG LEFDCCEDVF NFYNMYAAKA GFGIHCSTTS TCTFTGEVTR 60 KEYVCCKQGY ALTSTISRKR RQRGCTRTGC KAKLAILKVN EKNKYTVVGF NEVHNHDMTT 120 VDKVHLLRSH RNLTESTKAY SAHMRKVNIP VHKQVSLLEV QVGGLENVGF VRRDVYNYAR 180 DVRGEVIGHD AELLKEHFLA EQGKNESFYF NMEVDLEGMM GNVFWADARS RRAYVFFGMW 240 WYLIQRSTRT AMGWSLRLC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 82 | SRKRRQ |
2 | 78 | 104 | RKRRQRGCTRTGCKAKLAILKVNEKNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-35 | FAR1 family protein |