PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002080.1_g270.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family BBR-BPC
Protein Properties Length: 337aa    MW: 37741.7 Da    PI: 9.7597
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002080.1_g270.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind397.22.3e-12113371301
                  GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                                mdd+g+re  r k+ +y+ a  + l +++   +q+m+++aerda+++ernla+sekkaa+aerdmaflqrd+a+aern a++er
  Pav_sc0002080.1_g270.1.mk   1 MDDSGHREngRIKAeQYKAAqgQWLMQHQpsMKQIMAIMAERDAALQERNLAFSEKKAALAERDMAFLQRDAAIAERNSAIMER 84 
                                9*****999999999999444433443431135*************************************************** PP

                  GAGA_bind  78 dnkllalllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqr 155
                                dn++++l+++ensl+    s++p+g+q+++g+k++++ qq +++ p++++ ++++r+++++++ p+   a+  +++      ++
  Pav_sc0002080.1_g270.1.mk  85 DNAIATLQYRENSLNngnvSSCPPGCQISRGVKHMHHPQQhVHHpPHMNEASYGTRDMHTSDSVPMPPDASLPTKS------RQ 162
                                *************9999999********************555589*************99999966544444433......45 PP

                  GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPv 210
                                +k+p+e+k+ +++kk++ks +kvk+es+d +                             sk+++k++dl+ln+v++Dest+P+
  Pav_sc0002080.1_g270.1.mk 163 PKRPREPKTMAPNKKTSKSPRKVKRESEDLNkmtfdklhewkgsqdmggggddvnkhlvvSKSDWKCQDLGLNQVAYDESTMPA 246
                                6677888888888888888888888888744488888999******************************************** PP

                  GAGA_bind 211 PvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294
                                PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGt
  Pav_sc0002080.1_g270.1.mk 247 PVCSCTGILRQCYKWGNGGWQSSCCTTTMSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDNWAKHGT 330
                                ************************************************************************************ PP

                  GAGA_bind 295 nkfvtir 301
                                n+++ti+
  Pav_sc0002080.1_g270.1.mk 331 NRYITIK 337
                                ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MDDSGHRENG RIKAEQYKAA QGQWLMQHQP SMKQIMAIMA ERDAALQERN LAFSEKKAAL  60
AERDMAFLQR DAAIAERNSA IMERDNAIAT LQYRENSLNN GNVSSCPPGC QISRGVKHMH  120
HPQQHVHHPP HMNEASYGTR DMHTSDSVPM PPDASLPTKS RQPKRPREPK TMAPNKKTSK  180
SPRKVKRESE DLNKMTFDKL HEWKGSQDMG GGGDDVNKHL VVSKSDWKCQ DLGLNQVAYD  240
ESTMPAPVCS CTGILRQCYK WGNGGWQSSC CTTTMSMYPL PAVPNKRHAR VGGRKMSGSA  300
FNKLLSRLAA EGHDLSNPVD LKDNWAKHGT NRYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-158BBR-BPC family protein