PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002080.1_g020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 428aa    MW: 48121.9 Da    PI: 6.7644
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002080.1_g020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP24.83.7e-08158195139
                    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedv 39 
                                r+++sL+llt+kf++l++++++++++ln+ a+ L +++v
  Pav_sc0002080.1_g020.1.mk 158 RYDSSLGLLTKKFVSLIQEAKDRTLDLNKTAEVL-EDEV 195
                                6899*****************************9.5533 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MEMEDPNRLL RPSQFEFQLL HSHSQTQNHQ NHPSYLLPSL PSSQRLLPHS FPAFSPSIDS  60
GHHRLSDSAF ASHADTHSAF AKLALRPKKE IDDVAQIGGH EAAAGPSKVL HDPSLSIPQS  120
CTGRKHNPKS KVPKHTKAGT QRSTADSHNG LNPAIGCRYD SSLGLLTKKF VSLIQEAKDR  180
TLDLNKTAEV LEDEVESLYA EECRLDDAIR EKLELLRALE EDEKNKKFLF LTEEDISSLC  240
CFQNQTLIAI KAPQASYIEV IDPDDEEDTC FPQKQFRMIV RSTIGPIHLY LLSKYQGQRE  300
NIAVKQAKSA GSSSWNSSDY SRVEDGRLSS YHQGNKKDSS EILGLPGSEA SSGIQKIIPS  360
HVNANDDYWF RSEPERIRTG PRANNLSFKT ILGRVVQHWP MDIDRSVNGN QVVDCSRWHE  420
GYHILFMF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.11e-46E2F/DP family protein