PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002024.1_g150.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 691aa MW: 76708.9 Da PI: 10.3055

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002024.1_g150.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.9e-10	11	61	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrw 44 +W t E++llv+av+++G+++W+++a +++ + +t+ +c++++ Pav_sc0002024.1_g150.1.mk 11 PWGTLEELLLVCAVNRHGTKSWDSVAMEVQtrststfasTLLTAQDCRDKF 61 7*****************************999999999889999999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MAREHGTSGH PWGTLEELLL VCAVNRHGTK SWDSVAMEVQ TRSTSTFAST LLTAQDCRDK 60 FDDLKRRFVS KNDNQSHSLG QMVDELRNLR VDELRHEVHR RNVSIVSLEL KVKRLEEERE 120 RSLKEEAEAH PNNDLQSGGE DQLEASPENV AGETNSGEDF DSDERENRSF NESNSTSQRG 180 EAKENSVVAK QSEEEEPGPD GNEPDRVRTG TRTEPDRDCS VNGKVIDDEK EDNKKGGETV 240 GATQLGESNE FWESVSESKR EGKRGGVASK QNSDVQSSAS LSKRKRRRGG GGGEGGGRRS 300 RSRSSSGEEA EGDEVSPATS KGVKPKLVKH EPLIKGLRII RSHRLGSVFE RRLRSQESER 360 YKSLIRQHMD LHEVQSRLNK GVYTDCTHKF FRDLLLLFNN AVVFLRKTSP EHMAAQELRS 420 IVLKEMKDQL PKPQPAIDTV KLHAPKLESK VPKIEPDSSV KPSKPSIVVC GLRRSANGGG 480 GAKNRKGDKK ERREVEEKGK ASEVEDKGIR KKRTQERGGP RGSRRGSSKN VGKTEHAYGG 540 NELSSHDGLE EMKMEKIENA KTTKQGAART FLKRMKQNST STEVKRGSSD VSEGGESEDS 600 MVEEDEKKQK GKTKLDERKK RVTRSSTGRR GGRGGGRRDE ESSGRAKRGV GRPPKRPETA 660 EAGNGSGKRG RGNGEADQMG SAGRPRKRTR R

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MAREHGTSGH PWGTLEELLL VCAVNRHGTK SWDSVAMEVQ TRSTSTFAST LLTAQDCRDK  60
FDDLKRRFVS KNDNQSHSLG QMVDELRNLR VDELRHEVHR RNVSIVSLEL KVKRLEEERE  120
RSLKEEAEAH PNNDLQSGGE DQLEASPENV AGETNSGEDF DSDERENRSF NESNSTSQRG  180
EAKENSVVAK QSEEEEPGPD GNEPDRVRTG TRTEPDRDCS VNGKVIDDEK EDNKKGGETV  240
GATQLGESNE FWESVSESKR EGKRGGVASK QNSDVQSSAS LSKRKRRRGG GGGEGGGRRS  300
RSRSSSGEEA EGDEVSPATS KGVKPKLVKH EPLIKGLRII RSHRLGSVFE RRLRSQESER  360
YKSLIRQHMD LHEVQSRLNK GVYTDCTHKF FRDLLLLFNN AVVFLRKTSP EHMAAQELRS  420
IVLKEMKDQL PKPQPAIDTV KLHAPKLESK VPKIEPDSSV KPSKPSIVVC GLRRSANGGG  480
GAKNRKGDKK ERREVEEKGK ASEVEDKGIR KKRTQERGGP RGSRRGSSKN VGKTEHAYGG  540
NELSSHDGLE EMKMEKIENA KTTKQGAART FLKRMKQNST STEVKRGSSD VSEGGESEDS  600
MVEEDEKKQK GKTKLDERKK RVTRSSTGRR GGRGGGRRDE ESSGRAKRGV GRPPKRPETA  660
EAGNGSGKRG RGNGEADQMG SAGRPRKRTR R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	288	KRKRRR
2	284	288	RKRRR
3	288	298	RGGGGGEGGGR
4	608	620	KQKGKTKLDERKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	4e-39	MYB_related family protein