PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001954.1_g110.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 352aa    MW: 37939.9 Da    PI: 6.7232
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001954.1_g110.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016161183123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C+ C++ Fs++  L  H++ H
  Pav_sc0001954.1_g110.1.br 161 FTCNFCKREFSTSQALGGHQNAH 183
                                89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MSPNLFIKLK ISMLRMAEEP REEHLSPTFE ASNISATSDD PPPTKKDGPE NLDQKMKGKI  60
VIDDSDDDDT QQPPPPPVVS SSPSPSPSSR LRLDLKLCND DSAHGLGSSS SRLELSLFSP  120
SNLGSSNAGS SNPVSGYSQP NETTDEKPRG SDDKRSQPRV FTCNFCKREF STSQALGGHQ  180
NAHKQERALA KRRQGGLENM GGVLGHSPFS YYNPYSSLSS PSLYGSFNRS LGVRMDSMIH  240
KPSYPWSSTP SFGRFGPGSG AWSSRADSLL NFQSTIDRLN LEGLHVNAPS GILGLPGTSS  300
APRFDQEIGS VRNFGGSSSN FGINRPILSD LIRHEPPTSD TDAAGLDLSL KL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.11e-16C2H2 family protein