PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001900.1_g100.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 561aa MW: 62387.3 Da PI: 8.8618

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001900.1_g100.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.4	1.7e-33	301	441	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lp+G++F+Ptd+e++ ++L++kv +++ ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk Pav_sc0001900.1_g100.1.mk 301 LPAGVKFDPTDQEIL-QHLEAKVLSDTrklhplID--EfipTLEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRK 380 799*********9.999999956644322..22222333336******.666777788************ PP NAM 75 nratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +r+++ + +W++tgk+++vl+ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Pav_sc0001900.1_g100.1.mk 381 RRKVHteedgsETRWHKTGKTRPVLV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 441 744446555778**********.9*********66589************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MNHSERIAYL FVIALLSTSV VVLAVVLSLL LLCKKKPVQS QETVTPIKPS AQVYPLTNID 60 AATDGFNHRR IVGEGRLGTV YAAIFEKGEI AAVKRIHSRH VLSNAGFGFS RILRSISSAQ 120 HPNVVPIIGY SEGPGERIIV MEFVGSGACK ESDVYGFGIV LLELLSGRLC EEGRLVNWAS 180 PLIKEMRISE LLDPGLVIPD DIRALVRLAK VASACVGNSR KKVEEITRKL GVWDEPQSKN 240 GREIMTWCND SDDERAIQII TPPPPPPPPH NNNEFRNITC PSCGHHIEFQ DQAGIHDLPG 300 LPAGVKFDPT DQEILQHLEA KVLSDTRKLH PLIDEFIPTL EGENGICYTH PEKLPGVNKD 360 GQIRHFFHRP SKAYTTGTRK RRKVHTEEDG SETRWHKTGK TRPVLVGGAV KGFKKILVLY 420 TNYGRQRKPE KTNWVMHQYH LGNNEEEKDG ELVVSKVFYQ TQPRQCGSSI KDVPMFDHHK 480 GVNIRGGHGH DPLPIAKKAG LVEYYNPGGG FINYDHHNLH NQGGHNRESP PQLIPNLVVQ 540 GDGSSFIRLT ADASKGKLER K

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MNHSERIAYL FVIALLSTSV VVLAVVLSLL LLCKKKPVQS QETVTPIKPS AQVYPLTNID  60
AATDGFNHRR IVGEGRLGTV YAAIFEKGEI AAVKRIHSRH VLSNAGFGFS RILRSISSAQ  120
HPNVVPIIGY SEGPGERIIV MEFVGSGACK ESDVYGFGIV LLELLSGRLC EEGRLVNWAS  180
PLIKEMRISE LLDPGLVIPD DIRALVRLAK VASACVGNSR KKVEEITRKL GVWDEPQSKN  240
GREIMTWCND SDDERAIQII TPPPPPPPPH NNNEFRNITC PSCGHHIEFQ DQAGIHDLPG  300
LPAGVKFDPT DQEILQHLEA KVLSDTRKLH PLIDEFIPTL EGENGICYTH PEKLPGVNKD  360
GQIRHFFHRP SKAYTTGTRK RRKVHTEEDG SETRWHKTGK TRPVLVGGAV KGFKKILVLY  420
TNYGRQRKPE KTNWVMHQYH LGNNEEEKDG ELVVSKVFYQ TQPRQCGSSI KDVPMFDHHK  480
GVNIRGGHGH DPLPIAKKAG LVEYYNPGGG FINYDHHNLH NQGGHNRESP PQLIPNLVVQ  540
GDGSSFIRLT ADASKGKLER K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-122	NAC family protein