PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001888.1_g110.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 306aa    MW: 35232.3 Da    PI: 10.0815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001888.1_g110.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.6e-1326112799
                                .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                         B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                ++ + k++ l++p+kf+ ++g++   s  + l+ +sg +W+++l  r+  ++ +l kGW +F     L+   ++vF ++g+s+f
  Pav_sc0001888.1_g110.1.mk  26 SKGTCKQSKLRIPNKFLMKYGYD--LSNPVFLKLPSGSEWKIEL--RRWEDEAWLDKGWPKFSTFYSLDYCHSLVFGYEGKSKF 105
                                444556778***********999..6667***************..88888899*************************99999 PP

                                ..EEEEE-S CS
                         B3  91 elvvkvfrk 99 
                                  +v++f++
  Pav_sc0001888.1_g110.1.mk 106 --CVHIFDR 112
                                ..*****98 PP
2B356.84.1e-18211298192
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                f+  +t+s++++s  + +  kf+++h ++  +    +l+ ++gr+W v l   ++++++ +++GW +Fv++n+L+ gD++vF l
  Pav_sc0001888.1_g110.1.mk 211 FIVPMTRSYTNRSF-VNIGAKFIKKHLLNRSR-DNAILRVSDGRTWPVSL--GQQGKGVRFQTGWMKFVQDNQLEIGDVCVFVL 290
                                66778888888776.***********777555.48999************..999999*************************9 PP

                                -SS.SEE.. CS
                         B3  85 dgr.sefel 92 
                                +++ ++   
  Pav_sc0001888.1_g110.1.mk 291 SNDiKRL-I 298
                                9885544.4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MASFQRKIPN RPTFSTNTPH FLKIISKGTC KQSKLRIPNK FLMKYGYDLS NPVFLKLPSG  60
SEWKIELRRW EDEAWLDKGW PKFSTFYSLD YCHSLVFGYE GKSKFCVHIF DRNFTEIAYP  120
LTMPEMKETD EVDDSESESE SDDDFSDDSV EILDNFLPHS RKSSSSGKSE FPAKRHCSGM  180
STTRRVVKRT GSAKVIALQR AKAFKSDKPS FIVPMTRSYT NRSFVNIGAK FIKKHLLNRS  240
RDNAILRVSD GRTWPVSLGQ QGKGVRFQTG WMKFVQDNQL EIGDVCVFVL SNDIKRLIDV  300
VLFRAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-19B3 family protein