PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001872.1_g060.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 351aa MW: 39158 Da PI: 8.9499

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001872.1_g060.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.2	8.4e-13	48	104	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g Pav_sc0001872.1_g060.1.mk 48 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAARAYDLAALKYWG 104 57*****************99998898888888******************98 PP
2	AP2	51.3	3e-16	147	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Pav_sc0001872.1_g060.1.mk 147 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 198 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MAKTSQQNQK NTASSNNSST NNTNSTATTK VKRTRKSVRR DSPPQRSSIY RGVTRHRWTG 60 RYEAHLWDKN CWNESQNKKG RQGAYDDEEA AARAYDLAAL KYWGQDTILN FPLGTYPEEL 120 KEMESQSKEE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA 180 TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKSLCPNNQN VPNNAQPNPN GDLSPTQNPN 240 SKLGLGFIPN YHSSSSSASD STIALPQPGN GASASSALGL LLQSPKFKEM LERTSASSTL 300 SEPNIPRRSF PDDIQTYFDC QDLNSYAEGD DIIFGDLQSF ASPVFHCELD A

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MAKTSQQNQK NTASSNNSST NNTNSTATTK VKRTRKSVRR DSPPQRSSIY RGVTRHRWTG  60
RYEAHLWDKN CWNESQNKKG RQGAYDDEEA AARAYDLAAL KYWGQDTILN FPLGTYPEEL  120
KEMESQSKEE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA  180
TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKSLCPNNQN VPNNAQPNPN GDLSPTQNPN  240
SKLGLGFIPN YHSSSSSASD STIALPQPGN GASASSALGL LLQSPKFKEM LERTSASSTL  300
SEPNIPRRSF PDDIQTYFDC QDLNSYAEGD DIIFGDLQSF ASPVFHCELD A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	3e-98	AP2 family protein