PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001812.1_g030.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 107aa MW: 12991.9 Da PI: 9.1071 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 90.2 | 3.4e-28 | 2 | 105 | 271 | 374 |
GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 +e++lpre+++r E+e++gr++ nv+aceg++r+er et+++W+ r ++aGF+++pl++++ k++++++ + + + v+e+ Pav_sc0001812.1_g030.1.br 2 FEETLPREDQQRLLFEKEVFGRDVINVIACEGSRRFERPETYKQWQFRNKRAGFRQLPLDQEILKKVRSMVTSEYHKDFVVDED 85 6899*******************************************************************9999888****** PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 ++++gWk+r + ++S W+ Pav_sc0001812.1_g030.1.br 86 GMWVLQGWKGRIIHAISYWK 105 *******************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence |
MFEETLPRED QQRLLFEKEV FGRDVINVIA CEGSRRFERP ETYKQWQFRN KRAGFRQLPL 60 DQEILKKVRS MVTSEYHKDF VVDEDGMWVL QGWKGRIIHA ISYWKPV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 4e-42 | GRAS family protein |