PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001792.1_g030.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 522aa MW: 60041.7 Da PI: 8.1469

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001792.1_g030.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.6	2.4e-19	31	119	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn YA ++ F +r s++++ + +ge+t++++vC k+g++ +++ + ++rr+r trtgCkakl + k k ++k+ v +++ Pav_sc0001792.1_g030.1.br 31 NFYNMYAAKAEFGIRCSATRTCTFTGEVTRKEYVCCKQGYSLTSTVS--RKRRQRGCTRTGCKAKLAILKVKeKNKYTVVGFNE 112 6***************************************99888..9*************988887******* PP FAR1 84 eHnHela 90 HnH+++ Pav_sc0001792.1_g030.1.br 113 VHNHDMT 119 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MECEGQVTPE VSLDLKPKLG LEFDCYEDVF NFYNMYAAKA EFGIRCSATR TCTFTGEVTR 60 KEYVCCKQGY SLTSTVSRKR RQRGCTRTGC KAKLAILKVK EKNKYTVVGF NEVHNHDMTT 120 VDKVHLLRSH RNLTESTKAY SAHMSKVNIP AYKQEAAEGV GPSGRDLDPL NKRSWVRSQA 180 LANRAEFVGR GPRFALDSTS RVDSEGRMRN VFWADARSRR AYGFFGDVVV FDTTFNTNCY 240 GMVFAPLLGV NNHRQTVLFG CAFLTSEITD SFVWLFEEFK KAMLGEPPKM IITDQDAAMS 300 KAIALTLPTT FHRYCIWHIL NKFMEKPGIG ECFSEMCKCI WGMDTKEEFD AKWDEIITSN 360 GLKDHPWLSS IHALQENWVP SYVKHVSSAG MSSSQRVESC HAFFKQYINR KNTFMEFIVR 420 FERALGSQRH KELMADHVDT NEKPPLPFRT PMQHQMARIY TLEILEMFER EDFRSLLCLF 480 ELIEQDETQC RYKVSERVNP GGTQMKELVH DKDADKAYCS CK

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MECEGQVTPE VSLDLKPKLG LEFDCYEDVF NFYNMYAAKA EFGIRCSATR TCTFTGEVTR  60
KEYVCCKQGY SLTSTVSRKR RQRGCTRTGC KAKLAILKVK EKNKYTVVGF NEVHNHDMTT  120
VDKVHLLRSH RNLTESTKAY SAHMSKVNIP AYKQEAAEGV GPSGRDLDPL NKRSWVRSQA  180
LANRAEFVGR GPRFALDSTS RVDSEGRMRN VFWADARSRR AYGFFGDVVV FDTTFNTNCY  240
GMVFAPLLGV NNHRQTVLFG CAFLTSEITD SFVWLFEEFK KAMLGEPPKM IITDQDAAMS  300
KAIALTLPTT FHRYCIWHIL NKFMEKPGIG ECFSEMCKCI WGMDTKEEFD AKWDEIITSN  360
GLKDHPWLSS IHALQENWVP SYVKHVSSAG MSSSQRVESC HAFFKQYINR KNTFMEFIVR  420
FERALGSQRH KELMADHVDT NEKPPLPFRT PMQHQMARIY TLEILEMFER EDFRSLLCLF  480
ELIEQDETQC RYKVSERVNP GGTQMKELVH DKDADKAYCS CK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	82	SRKRRQ
2	78	104	RKRRQRGCTRTGCKAKLAILKVKEKNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-76	FAR1 family protein