PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001786.1_g200.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 361aa MW: 42237.9 Da PI: 7.4969

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001786.1_g200.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.9	3.3e-18	14	95	4	90
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 n+YA + GFs+rk + ++ +n+ i +r++ Csk+g+ ++ + + ++ trtgC+a ++ + + dg+w++++++++HnHe+ Pav_sc0001786.1_g200.1.br 14 NSYALKKGFSIRKGNIQRDAKNN-IRQRDYLCSKQGFYDDLCEV---KTVHQLDTRTGCRALIRFTVD-DGVWKISHINSDHNHEF 94 89*************997776.*********9997665...888999**********9.**************8 PP FAR1 90 a 90 a Pav_sc0001786.1_g200.1.br 95 A 95 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MEVCNEVQAY NLCNSYALKK GFSIRKGNIQ RDAKNNIRQR DYLCSKQGFY DDLCEVKTVH 60 QLDTRTGCRA LIRFTVDDGV WKISHINSDH NHEFAKLEER QFLKSGRKIQ KAHANVMSSM 120 VEAGIRPTKS YSYLAKEVGG YENVGFTKKD CLNYLHRKKE ELIEGGDAQS LINHFKHKQA 180 EDPNFFYSVQ VDQCTRMMNF FWRDGRSKLD YDCFGDVLCF DTTFRTNKYN LICAPFVGVN 240 HHWKNVLLDC AFLLDESTKS FVWLFETFLE SMGNKHLITI FTDEDKAMAN AIEIVFPQTR 300 HRLCTWHIAK NATQPLAGLY TNPEFSNYFN KCFYGCFSES EFEDTWDHMI KTFKLENHSW 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MEVCNEVQAY NLCNSYALKK GFSIRKGNIQ RDAKNNIRQR DYLCSKQGFY DDLCEVKTVH  60
QLDTRTGCRA LIRFTVDDGV WKISHINSDH NHEFAKLEER QFLKSGRKIQ KAHANVMSSM  120
VEAGIRPTKS YSYLAKEVGG YENVGFTKKD CLNYLHRKKE ELIEGGDAQS LINHFKHKQA  180
EDPNFFYSVQ VDQCTRMMNF FWRDGRSKLD YDCFGDVLCF DTTFRTNKYN LICAPFVGVN  240
HHWKNVLLDC AFLLDESTKS FVWLFETFLE SMGNKHLITI FTDEDKAMAN AIEIVFPQTR  300
HRLCTWHIAK NATQPLAGLY TNPEFSNYFN KCFYGCFSES EFEDTWDHMI KTFKLENHSW  360
L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-78	FAR1 family protein