PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001770.1_g080.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 457aa MW: 49202.3 Da PI: 6.5096

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001770.1_g080.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.5e-18	43	90	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l ++v+++G g+W+++ r g++R++k+c++rw ++l Pav_sc0001770.1_g080.1.mk 43 KGPWTAAEDQILMEYVRKHGEGNWNAVQRNSGLNRCGKSCRLRWANHL 90 79******************************************9986 PP
2	Myb_DNA-binding	23.2	1.5e-07	96	124	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g++++eE+ l++++++++G++ W++ a+ Pav_sc0001770.1_g080.1.mk 96 KGAFSPEEERLILELHAKYGNK-WARMASQ 124 799*****************.*9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MTPSSNNNNS GLPQQSEGRS PQELSGGGGG GGDVVEGSKG LKKGPWTAAE DQILMEYVRK 60 HGEGNWNAVQ RNSGLNRCGK SCRLRWANHL RPNLKKGAFS PEEERLILEL HAKYGNKWAR 120 MASQVTTNDP IQAHNVHSLS PTPPSLSPLS SPHHPKSTTL FDPSNPTTNS SFSSFTFHRP 180 APILGAPVRY KRYRDSTGFS PPVSPTPQRS ASILRTNSMT DMASSHLTGT NSMPDIASFQ 240 FPRTLNPSLP PLPSSQTQFE YSESFLSSTG SVYSVKSELP SSQVSQTQSE VTIDTKVSSA 300 GAAAAVSASQ SHISNGLLED LLQEAEVLAC GGGNPSKRAN GLFSSFEEKY VSDNYARWLQ 360 STSSMAGSLL EAKPIQDDHI SSMPEDLSKL FSFIPSTDPI SDWYSDSGEL SNSHSSGVTD 420 ACLDFDMQQH MASLFPVAAT AEHGRTSSSW DNMPGIC

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MTPSSNNNNS GLPQQSEGRS PQELSGGGGG GGDVVEGSKG LKKGPWTAAE DQILMEYVRK  60
HGEGNWNAVQ RNSGLNRCGK SCRLRWANHL RPNLKKGAFS PEEERLILEL HAKYGNKWAR  120
MASQVTTNDP IQAHNVHSLS PTPPSLSPLS SPHHPKSTTL FDPSNPTTNS SFSSFTFHRP  180
APILGAPVRY KRYRDSTGFS PPVSPTPQRS ASILRTNSMT DMASSHLTGT NSMPDIASFQ  240
FPRTLNPSLP PLPSSQTQFE YSESFLSSTG SVYSVKSELP SSQVSQTQSE VTIDTKVSSA  300
GAAAAVSASQ SHISNGLLED LLQEAEVLAC GGGNPSKRAN GLFSSFEEKY VSDNYARWLQ  360
STSSMAGSLL EAKPIQDDHI SSMPEDLSKL FSFIPSTDPI SDWYSDSGEL SNSHSSGVTD  420
ACLDFDMQQH MASLFPVAAT AEHGRTSSSW DNMPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	9e-48	MYB family protein