PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001699.1_g490.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 851aa MW: 92209 Da PI: 6.8139 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 415.4 | 5e-127 | 479 | 838 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 +lLl+cAeavs++++ +a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lpps + +++++ ++a+++f+ Pav_sc0001699.1_g490.1.mk 479 LTLLLQCAEAVSADNFDEATKILLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPPSYVPISHTQKMVSAFQVFN 562 579********************************************************************************* PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169 +sP++kfsh+taNqaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp +R+Tg+g s e+le+tg+rL++fA Pav_sc0001699.1_g490.1.mk 563 GISPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFA 642 ****************************************************************....**************** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 ++lg+pfef + va+++ +l++e+L+++++Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++h ++sF Pav_sc0001699.1_g490.1.mk 643 DKLGLPFEFFP-VAEKVGSLNPERLNISKREAVAVHWLQ--HSLYDVTGSDSN----TLWLLQRLAPKVVTVVEQDLSH-AGSF 718 ***********.7*************************9..999999999999....**********************.899* PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 l rf+ea++yysalfdsl a++++eseer++vE++ll+rei+nv+a g +r + + + +Wre+++++GF+ ++l +aa+qa Pav_sc0001699.1_g490.1.mk 719 LGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FYNWREKFQQSGFRGISLAGNAATQA 801 ***************************************************888776.************************** PP GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 lll +++sdgy++ e++g+l lgWkd L+++SaWr Pav_sc0001699.1_g490.1.mk 802 TLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 838 ************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence |
MAACALLGDH NGDHISGNGS SNNNSHGGGS PSCPMTSTTN SNSQGSSVEQ QPPRQHQNQQ 60 QQQRQSTEGS KMVRKRMACE IEVQNNPTSR NTSASDYMRL SRRSSSIINN NPNPNATKVN 120 NNSMVYPNYS TMLLPVPSST NLTTLTSAGG ALSPASASAS SAAASAANWG PIDPLSLHHH 180 HQSGALPPHQ LQLQPQTLTP AVCGFSGLPL FPPEKTTPSN QSTATPSSIS ISMEDSSSAT 240 AWIDGIIKDL IHSSTNVSIP QLIHNVREII FPCNPNLASL LEYRLRSISE PPPPPPPIPN 300 FNPATVPELR RRREALQLQQ QQNQHHHHHH HQGPGALKLN LDSATLHDVA IFTNPTTAET 360 ASVATHVMNS NDLYLHSWTG GGGGAGPTPI TCSQTNPHHP NSPFNQAIHH TQDKQLENSS 420 SSSPAAESTT PTAAPATTTT ATTTPTPPPT TPSAAVSLIR ERKEEMRQQK RDEEGLHLLT 480 LLLQCAEAVS ADNFDEATKI LLEISELSTP FGTSAQRVAA YFSEAMSARL VSSCLGIYAS 540 LPPSYVPISH TQKMVSAFQV FNGISPFVKF SHFTANQAIQ EAFEREDRVH IVDLDIMQGL 600 QWPGLFHILA SRPGGPPYVR LTGLGTSMEA LEATGKRLSD FADKLGLPFE FFPVAEKVGS 660 LNPERLNISK REAVAVHWLQ HSLYDVTGSD SNTLWLLQRL APKVVTVVEQ DLSHAGSFLG 720 RFVEAIHYYS ALFDSLGASY GEESEERHVV EQQLLSREIR NVLAVGGPSR SGEVKFYNWR 780 EKFQQSGFRG ISLAGNAATQ ATLLLGMFPS DGYTLVEDNG TLKLGWKDLC LLTASAWRPP 840 FHATTNPNLH Y |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 0.0 | GRAS family protein |