PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001518.1_g080.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 670aa MW: 74441.6 Da PI: 4.7482

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001518.1_g080.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.8e-07	527	570	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++ a++q G++ ++ I + gRt+ q+k+++ k Pav_sc0001518.1_g080.1.mk 527 VRWSKQDTELFYVAIQQCGSD-FTMIQELYFPGRTRHQIKLKFKK 570 69*****************.*98766********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MEDLDDIFLD PSNAPARPGG RFRPKAKPRP SKVASTAATS ALRNDRTEKP ATLSPTVSDT 60 VPSVKSIDVG DVKVTDPNAD IFSGLECLDG FLSQTTGGTA ESAASKSHVS AEPSAFMVCD 120 VAEAQTFSDC CTTQDPVSCR EVSVSNKPDE VHLETKVDGV FSEFEVLDVV SDATISSGQR 180 VGKFQPKLKV KKGKEHLHIP PAEVECMLSQ AVLVPSETDL NESSLPAFPP GHVLDHPSPR 240 FGDSSTPHPT SDPQVNTEYI AETTHSDGAI IGDAVLSEDV GGTPGKEGHK SRNRKGSTAS 300 NSSQKRKSFA ASEEAEGGTS SRKLRKRLPR QDVEELVHEA NEDSFTAEPS SGSNVNEDEN 360 NDNEYREHKT LQRKRAPRKS KEPESGKEEP VQKRKRAKEA PDKSTKDPPK RFSHSTRRTK 420 RHVDKSLLEI PEDEIDHQRL SLKNLIRLAE HRELLAIKEA RKMTTPVPDE SANNDSHKEA 480 YQDEENEEGT FPSEHDGNSE ENQASYRVNA SSFLLNYQSY MDKAPTVRWS KQDTELFYVA 540 IQQCGSDFTM IQELYFPGRT RHQIKLKFKK EERQNPLRIN EAVLSRSTCS TDHSQFTSYI 600 ERLQQVAQAN KEEEAEPTHD TDEGVKKTEL EEPEDQEADV AEVQEEAVDA EVDNPLKSDE 660 IDDEEFTWSE

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MEDLDDIFLD PSNAPARPGG RFRPKAKPRP SKVASTAATS ALRNDRTEKP ATLSPTVSDT  60
VPSVKSIDVG DVKVTDPNAD IFSGLECLDG FLSQTTGGTA ESAASKSHVS AEPSAFMVCD  120
VAEAQTFSDC CTTQDPVSCR EVSVSNKPDE VHLETKVDGV FSEFEVLDVV SDATISSGQR  180
VGKFQPKLKV KKGKEHLHIP PAEVECMLSQ AVLVPSETDL NESSLPAFPP GHVLDHPSPR  240
FGDSSTPHPT SDPQVNTEYI AETTHSDGAI IGDAVLSEDV GGTPGKEGHK SRNRKGSTAS  300
NSSQKRKSFA ASEEAEGGTS SRKLRKRLPR QDVEELVHEA NEDSFTAEPS SGSNVNEDEN  360
NDNEYREHKT LQRKRAPRKS KEPESGKEEP VQKRKRAKEA PDKSTKDPPK RFSHSTRRTK  420
RHVDKSLLEI PEDEIDHQRL SLKNLIRLAE HRELLAIKEA RKMTTPVPDE SANNDSHKEA  480
YQDEENEEGT FPSEHDGNSE ENQASYRVNA SSFLLNYQSY MDKAPTVRWS KQDTELFYVA  540
IQQCGSDFTM IQELYFPGRT RHQIKLKFKK EERQNPLRIN EAVLSRSTCS TDHSQFTSYI  600
ERLQQVAQAN KEEEAEPTHD TDEGVKKTEL EEPEDQEADV AEVQEEAVDA EVDNPLKSDE  660
IDDEEFTWSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-43	MYB_related family protein