PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001502.1_g200.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 154aa    MW: 16624.5 Da    PI: 4.4938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001502.1_g200.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.0002618432654
                               TSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH 26 llPkaskapskKlsKaeiLekAveYIksL 54
                               l       +s  l+Ka+i   A +YIk+L
  Pav_sc0001502.1_g200.1.mk 18 LRAAT---NSNALNKASIIVDASNYIKEL 43
                               33333...6667***************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MSSSDRKKAV LYHQLQQLRA ATNSNALNKA SIIVDASNYI KELKQKVDTL RQGVGTSTAP  60
NPSPAQVTVE TLERGFLINV LSDKNSPGLL VSILEAFEEL GLDVLDARVS CSDTFQLEAV  120
GGENQGQADS IDAHVVKEAV LQAIQNWSQS SEQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.14e-10bHLH family protein