PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001479.1_g020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 328aa    MW: 37431 Da    PI: 5.5042
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001479.1_g020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-34131042102
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                F++k+y++++d+++++li+w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++
  Pav_sc0001479.1_g020.1.mk  13 FVMKTYQMVNDPTTDKLITWGRANNSFIVVDPLDFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEW 87 
                                9********************999*****************************************999.........******* PP

                                XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                                F +g+++ll+++ r+k+
  Pav_sc0001479.1_g020.1.mk  88 FLRGQTHLLRNVVRRKH 104
                                ************99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MMMEENNNVI APFVMKTYQM VNDPTTDKLI TWGRANNSFI VVDPLDFSQR LLPAYFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFANEWFLR GQTHLLRNVV RRKHMGKNSY SNSNSSTCLL  120
QGKHEELDDE EILMEIARLK QEQKALEEEM ENMNKRLEAT ERRPQQMMAF LHKVAEDPEI  180
LPRIMLEKDR TVRAQLGEKK RRVMMITSTS SSSSGMGATN SVKTEDEDDG TVGVISSSPE  240
PGFEMESFYS TSPETSTARE WGRQRRVVDR VRAVQDPYNM NPTVSGHGIG NSSNSGYGYG  300
NSAEVGYLTE EPIPAPPPYP FSLLEGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-86HSF family protein