PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001476.1_g140.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HB-other
Protein Properties Length: 365aa    MW: 41347.8 Da    PI: 4.1045
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001476.1_g140.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.4e-08299346653
                                S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                   Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                +++k  +e+Le++++k++ p+ +++  + + ++L+ ++V  WF  +R 
  Pav_sc0001476.1_g140.1.mk 299 RLKKAHVETLESVYRKSKRPTNAMISSIVHVTNLPRKRVVKWFEDKRS 346
                                5678899*************************************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MAFASALNTP MGLHCLTLPS SRNERPPTNL ILPRQFPARF SSTLALARRR NQRTEVPSSK  60
PKIKKKSLAK KEVKDEEEED VDEDAIDALF RLLEEDLKND DASLDDEDLT EEELAKLEQE  120
VAEALGIVDD EEDEDEDEDD DDDDDDDDDD EDDEDDDDDV VVEIDAQEEE VDDDEEEEEE  180
EEEESPVKLK TWQLRRLAAA LKVGRRKTSI KILAAELCLD RPVVLELLRN PPPSLLMMCA  240
ALPDEPAPTI SVSQTMPVET AVETTVETVV ETTTESSEVE TTVKVPIHVM QQKFSAQKRL  300
KKAHVETLES VYRKSKRPTN AMISSIVHVT NLPRKRVVKW FEDKRSEDGV TDSRLPYRRP  360
APNTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-64HB-other family protein