PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pav_sc0001472.1_g070.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 20447.7 Da PI: 7.3043 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 54 | 4.7e-17 | 2 | 52 | 50 | 100 |
DUF260 50 peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l +k+e Pav_sc0001472.1_g070.1.mk 2 HPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLTCAKSE 52 799******************************************999876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence |
LHPHQREDAV NSLAYEADMR LRDPVYGCVG VISLLQHQLR QLQMDLTCAK SELSKYQNLQ 60 HGLTASHGLI AAAAAAAAAH THHPLHLQSS SSALHNNNNN NLGMGINLIS GGGGGRDHYP 120 HQFFPRDRDH QHQQQMMIRS FDAGNSYDAS LLAMNVSAAA GGIHGQLTHQ FQQPRAAAGD 180 DRRTIDPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65620.3 | 1e-37 | LBD family protein |