PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001461.1_g460.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | WOX | ||||||||
Protein Properties | Length: 220aa MW: 25412.5 Da PI: 5.1414 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.3 | 8.6e-21 | 102 | 162 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le+ Fe+ + +p +++++e++++l +++e++V++WFqNrRa+ k+ Pav_sc0001461.1_g460.1.mk 102 RQRWTPTPVQLQMLERIFEEgTGTPCKQKIKEITMELtqhgQISETNVYNWFQNRRARSKR 162 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 100.9 | 9.2e-33 | 101 | 164 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q+++Le+++++G+ tP k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Pav_sc0001461.1_g460.1.mk 101 ARQRWTPTPVQLQMLERIFEEGTGTPCKQKIKEITMELTQHGQISETNVYNWFQNRRARSKRKQ 164 789***********************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MMEWQQQQQQ QQQIQNQQQI IHHLQNPEDG IGNGNGGLYV KVMTDEQMEL LRRQIAVYAT 60 ICEQLVEMHK AVTAQQDLTG MRLGNFYCDP FMASGGHKIT ARQRWTPTPV QLQMLERIFE 120 EGTGTPCKQK IKEITMELTQ HGQISETNVY NWFQNRRARS KRKQSVPAQN NGESEAEPEV 180 ESPRDEKTKP EDIMSLDNSA PRAENMYLQS PELGFGNFDW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 164 | RRARSKRKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 9e-75 | WOX family protein |