PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001422.1_g110.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HB-other

Protein Properties

Length: 1074aa MW: 117863 Da PI: 4.5776

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001422.1_g110.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40	6.8e-13	909	952	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L + F++n+yp+++++e LA++lgL +qV+ WF N R Pav_sc0001422.1_g110.1.mk 909 EAVTQRLCKSFKENHYPDRSMKESLARELGLMAKQVSKWFENAR 952 667899************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1074 aa Download sequence
MADAAQLDIP PECVSSQTAK CQEESTSGQI HEIGSESQCS EKTKENIGCK VVQNELLEIC 60 KASNNADEQS QSFSENLTEN SHVENLGQPA EDVNKSSQGG AQNVTKNSLT EQLEMPHEDP 120 DVNNQTDKTS CSGQMSLEQT NDSGFGTSSS EPAEEKHPSG TFCVQNGLLQ TIMPLPICGG 180 SEQLQLISEN VNMASLNDQA GLPPEDVSKT CQTEKISCSL QITLQQINEF GSGSVPSETA 240 KQRDQLDSVP AQNDEVKTSK AVSSSIVFEQ PGPSIEAMTE DSPIGHSEPP LEDASKSLSD 300 KEMGPLPEDV TQNSSLQQSE TPLKNALKIS SCLGPKDKKN PKSRKRKYMS RSFVRSDRVL 360 RSRTGEKEKP KDLKLSNNVP TLESSNSIAN VSNGEEKKRK KRKSRRDNRA IADEFSRIRT 420 HLRYLLNRIG YEKSLIDAYS GEGWKGSSLE KLKPEKELQR ATSEILRRKL KIRDLFQRLE 480 SLCAEGMFPE SLFDSEGQID SEDIFCAKCG SKDVSLDNDI ILCDGACDRG FHQFCLEPPL 540 LSEDSNDQST PLFFAIYDSS VAYSFVWLAV PPDDEGWLCP GCDCKVDCID LLNDSQGTDL 600 SVTDSWEKVF PEAAAAASAG ENQDNHGLPS DDSDDNDYDP DGPETDNEIQ GEESSSDESE 660 YASASDGLET PNSNDEQYLG LPSEDSEDDD YNPYDPDVNE DVKQESSSSD FTSDSEDLGA 720 ALDDNIMSYE DVEGPKSMSL DDSKPHRGSG EQSSRHGQKK HSLQDELISL LESGPGQGES 780 APPSGKRHIE RLDYKRLHDE AYGNVPTDSS DDEDWNDIAT QRKRKKGTGQ VANRSPNGKT 840 SNIKNGVITK DIKPDVDENE NTPRRTPHRK SNVEDTSNLS NKSPKGSTKS GSTSGRAGSS 900 RSTYSRLGEA VTQRLCKSFK ENHYPDRSMK ESLARELGLM AKQVSKWFEN ARHCLKVGVD 960 KSASENCAPS PQTNSKPLEQ GDAIVGGSDH NGAQNKELHR TDDPMIGCCS RDVKDSELAT 1020 PGSSRSKLST PNNRKRKRRS DDPDPKTETP TPPAEPETNR KPSRVMTRRR KSVS

Sequence ? help Back to Top

Protein Sequence Length: 1074 aa Download sequence

MADAAQLDIP PECVSSQTAK CQEESTSGQI HEIGSESQCS EKTKENIGCK VVQNELLEIC  60
KASNNADEQS QSFSENLTEN SHVENLGQPA EDVNKSSQGG AQNVTKNSLT EQLEMPHEDP  120
DVNNQTDKTS CSGQMSLEQT NDSGFGTSSS EPAEEKHPSG TFCVQNGLLQ TIMPLPICGG  180
SEQLQLISEN VNMASLNDQA GLPPEDVSKT CQTEKISCSL QITLQQINEF GSGSVPSETA  240
KQRDQLDSVP AQNDEVKTSK AVSSSIVFEQ PGPSIEAMTE DSPIGHSEPP LEDASKSLSD  300
KEMGPLPEDV TQNSSLQQSE TPLKNALKIS SCLGPKDKKN PKSRKRKYMS RSFVRSDRVL  360
RSRTGEKEKP KDLKLSNNVP TLESSNSIAN VSNGEEKKRK KRKSRRDNRA IADEFSRIRT  420
HLRYLLNRIG YEKSLIDAYS GEGWKGSSLE KLKPEKELQR ATSEILRRKL KIRDLFQRLE  480
SLCAEGMFPE SLFDSEGQID SEDIFCAKCG SKDVSLDNDI ILCDGACDRG FHQFCLEPPL  540
LSEDSNDQST PLFFAIYDSS VAYSFVWLAV PPDDEGWLCP GCDCKVDCID LLNDSQGTDL  600
SVTDSWEKVF PEAAAAASAG ENQDNHGLPS DDSDDNDYDP DGPETDNEIQ GEESSSDESE  660
YASASDGLET PNSNDEQYLG LPSEDSEDDD YNPYDPDVNE DVKQESSSSD FTSDSEDLGA  720
ALDDNIMSYE DVEGPKSMSL DDSKPHRGSG EQSSRHGQKK HSLQDELISL LESGPGQGES  780
APPSGKRHIE RLDYKRLHDE AYGNVPTDSS DDEDWNDIAT QRKRKKGTGQ VANRSPNGKT  840
SNIKNGVITK DIKPDVDENE NTPRRTPHRK SNVEDTSNLS NKSPKGSTKS GSTSGRAGSS  900
RSTYSRLGEA VTQRLCKSFK ENHYPDRSMK ESLARELGLM AKQVSKWFEN ARHCLKVGVD  960
KSASENCAPS PQTNSKPLEQ GDAIVGGSDH NGAQNKELHR TDDPMIGCCS RDVKDSELAT  1020
PGSSRSKLST PNNRKRKRRS DDPDPKTETP TPPAEPETNR KPSRVMTRRR KSVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	371	RKRKYMSRSFVRSDRVLRSRTGEKEKPK
2	397	401	KKRKK
3	397	403	KKRKKRK
4	398	406	KRKKRKSRR
5	822	826	KKRKK
6	822	826	RKRKK
7	1034	1039	RKRKRR
8	1067	1072	TRRRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-91	HB-PHD family protein