PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001405.1_g720.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 808aa MW: 88162.2 Da PI: 6.5496 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4.2e-20 | 117 | 172 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r e++++l+L+++qVk+WFqNrR+++k Pav_sc0001405.1_g720.1.mk 117 KKKYHRHTPSQIQELENFFKECPHPDEKQRLEMSRRLSLETKQVKFWFQNRRTQMK 172 79999************************************************999 PP | |||||||
2 | START | 175.1 | 4.3e-55 | 327 | 548 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla. 77 la +a++elvk+a+a++p+Wvk s e++n +e++ + + +e r++ +v+ ++ lve+l+d + +W e++ Pav_sc0001405.1_g720.1.mk 327 LAMAAMDELVKMAQADSPLWVKTSdggtEILNHEEYRAFSCIGTKpsnFVTEGTRDTCMVIINSLALVETLMDAN-RWAEMFSc 409 57799*******************9*999999999987655544466679*************************.******** PP ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS START 78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSg 151 +a++++ issg galq+m ae q+lsplvp R f+R+++q+++g+w++vdvS+d +q+ +++ + ++++pSg Pav_sc0001405.1_g720.1.mk 410 lvaRASVIDMISSGmggtrnGALQVMHAEHQVLSPLVPvRPLKFLRFCKQHQEGVWAVVDVSIDINQEGSNTNAFLNCRRFPSG 493 ************************************************************************************ PP EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++++n+ skvtw+eh +++++++h l+ +l++sg+ +ga++w+atlqrqce+ Pav_sc0001405.1_g720.1.mk 494 CIVQDMPNNCSKVTWIEHSEYDENTVHHLFWQLLRSGMGFGAQRWLATLQRQCEC 548 *****************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence |
MSFGGLISGG SGNSGGGGAR VVADIAPHTP YMSSGAIAQP HFLTSPVPNS MRSSSALSLS 60 IKNMDGHSEL GLIAENFDPG IIGRMRDDEY ESRSGSDNFE GASGDDQDAG DERRPRKKKY 120 HRHTPSQIQE LENFFKECPH PDEKQRLEMS RRLSLETKQV KFWFQNRRTQ MKTQLERHEN 180 IILRQENDKL RAENGVMKDA MANPVCNSCG GPAIPGQISF EEHQLRIENA RLKDELNRIC 240 TLANKFLGRP ISSLASPISL PNSTSGLELG VGRNGIGSLS AGGSGLPMGL NLGDGVSSSS 300 PMMPLIKSST GILGNEMPYE RSMYIDLAMA AMDELVKMAQ ADSPLWVKTS DGGTEILNHE 360 EYRAFSCIGT KPSNFVTEGT RDTCMVIINS LALVETLMDA NRWAEMFSCL VARASVIDMI 420 SSGMGGTRNG ALQVMHAEHQ VLSPLVPVRP LKFLRFCKQH QEGVWAVVDV SIDINQEGSN 480 TNAFLNCRRF PSGCIVQDMP NNCSKVTWIE HSEYDENTVH HLFWQLLRSG MGFGAQRWLA 540 TLQRQCECLA FLISSTNSIE DHTGLGTNGK KSMLKLAQRM IDNFCAGVSA SSVRKWDKLC 600 VNNVSEDLRV MARKSVDDPG EPAGIVLSGS TSVWLPVSRH RLFDFLRDEQ LRDQWDVLSK 660 THKMQLMLRI AKSQGGGNCV SLLRANVIDA NENTMLMLQE SWSDASGSLV VYAPVDPASM 720 SAVMRGGDSA YVALLPSGFA ILPGGPPGYG MVKTEGNGCD DGGCFLTVGF QILGSNYPAA 780 KLDVQSINTV NTLVSHTIEK IKSALQVP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | RRPRKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |