PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001405.1_g540.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARR-B
Protein Properties Length: 783aa    MW: 85242 Da    PI: 6.4141
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001405.1_g540.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.12.2e-24210263155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                kp+++Wt+ LH++F+ a++++ G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Pav_sc0001405.1_g540.1.mk 210 KPKVVWTNSLHNQFLLAIRHI-GLDKAVPKRILEFMNVPGLTRENVASHLQKYRI 263
                                79*******************.********************************6 PP
2Myb_DNA-binding26.31.7e-08213262248
                                SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                                  WT  ++ +++ a++  G +   +k+I + m+  g+t++++ s++qky+
  Pav_sc0001405.1_g540.1.mk 213 VVWTNSLHNQFLLAIRHIGLDkaVPKRILEFMNvPGLTRENVASHLQKYR 262
                                68***********************************************7 PP
3DUF26039.41.7e-1270175546100
                     DUF260  46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                                 ++lp++ r +a+++l+yeAe+r+rd vyG+v++i++l+q++++++ +la++++e
  Pav_sc0001405.1_g540.1.mk 701 FQQLPHHLRGEAADTLCYEAECRTRDCVYGCVKTISQLHQEINKAECQLAKTRAE 755
                                689999********************************************99987 PP
4Response_reg75.71.7e-25271351109
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                +l+vdD+ + + ++  +l+   y +v +++++ +al++l++ +  +Dl+++D+ mp+m+G+el k+ +ee  klp+i+++a ++
  Pav_sc0001405.1_g540.1.mk  27 ILVVDDDATTLAIVSAMLKTWSY-QVVSVRNPIDALATLRAGKgiFDLVVTDLHMPQMNGFELQKHVHEEF-KLPVIMMSADDK 108
                                89*********************.9999*****************************************99.************ PP

                                HHHHHHHHHTTESEEEESS--HHHHHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpeelvk 109
                                e+ +l+ l+ G+  +++Kp++++++ +
  Pav_sc0001405.1_g540.1.mk 109 ESVILKSLEGGVVYYIVKPVSKDDIKN 135
                                ***********************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    
MDAATERSEF RQSAANTKPS FVDMINILVV DDDATTLAIV SAMLKTWSYQ VVSVRNPIDA  60
LATLRAGKGI FDLVVTDLHM PQMNGFELQK HVHEEFKLPV IMMSADDKES VILKSLEGGV  120
VYYIVKPVSK DDIKNVWQYA VAAKKGKSVT IEEIESAPGE APGEVEDGSS ETSSDTDEEK  180
QEKKAESKVK KARKRHREDD NEERMVAPKK PKVVWTNSLH NQFLLAIRHI GLDKAVPKRI  240
LEFMNVPGLT RENVASHLQK YRIFLKRVAE KARLSKCLSE RVFRSSFALG HPALVFNNVQ  300
RDQYYSQLLN PQQMGTSIAS TFQPSAGNGS TLALTAAASN NLGSIQFPNY HQSSSSNSSR  360
SFPQLIGSGQ SRLLSNNQAN ILCQQPMLGN GNEDQLLCQA NRRTAAFGVQ QLMNTFGNGG  420
MSFGLMNNNI GTNSLMQVYP QQSQQRQNGV FTFTNNPFSY NFATSGNQNS SSYTTLSSSF  480
ENMGSNVNNV NQRVPNSSHQ LVSDFAGSQI MSSSGRELVG LMGSQPTGML NNITNNINIG  540
GGYPNVSLTG APIGNNNGIF NSGYMAQLGA SSSSMSSSAG FEISASSAYQ FPPSLLKNNG  600
DNQQQNVPVL PPPAGNINDQ CGPANMNVGG GNVENSHSGV MDNTITTDAL PTLINNNNIT  660
HEQELQQQQE GGDQQVVNPE FGGNVFDSED YSILFNPEHP FQQLPHHLRG EAADTLCYEA  720
ECRTRDCVYG CVKTISQLHQ EINKAECQLA KTRAEIAFIS SSGGQGRTTT TSTSSPITSS  780
TKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-59ARR-B family protein