PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001405.1_g1560.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 340aa    MW: 37403.2 Da    PI: 7.6835
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001405.1_g1560.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.5e-1279123147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 r +W++ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Pav_sc0001405.1_g1560.1.mk  79 RESWSEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 123
                                 789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MSRSLSLLQN PEPDYSEFMV SKSPNPPEGL YLDPSGMALP GLGPFGSVTT SATTTTSTTS  60
SLEDLSKKIR KPYTITKSRE SWSEPEHDKF LEALQLFDRD WKKIEAFIGS KTVIQIRSHA  120
QKYFLKVQKN GTSEHLPPPR PKRKAAHPYP QKASKNALAL PQVSGSCQSS SALHESGFIQ  180
RPDSASMLMS PVPCTVVPSW TDGSMQTANL SHESKGPTVL NNSCSSTEST PKAQPVDGTT  240
DLMIRSHALR VLPDFSQVYS FIGSVFDPNV TGHLQKLKKM DPIDVDTVLL LMRNLSINLS  300
SPDFEDHRKL LSSYKIDADT ESHGDATKSL CDDDQHKKVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-110MYB_related family protein