PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001341.1_g120.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 536aa    MW: 60595 Da    PI: 4.3172
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001341.1_g120.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS142.15.4e-441635332374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL +  ea++ g+ el + +L  lse ++p g++++Rla+ + + +  +  +           +++s    ++  aal+lf+
  Pav_sc0001341.1_g120.1.mk 163 RHLLKAYGEAMEMGQRELEEVILRCLSEKVNPLGQSLERLAFNLCQEIDDQQGD----Y-----LKQES---CKNFEAALNLFY 234
                                78999999**********************************877666555544....2.....23333...56777899**** PP

                       GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetg 162
                                + +P+ +f+h +aN aIlea+ ++ e+vHi+Dfd+++G+Q   L++a a+R +   +l++T+++   ++       + + eet+
  Pav_sc0001341.1_g120.1.mk 235 QSFPYGRFAHYAANTAILEAIPEDaETVHIVDFDMGEGVQLSQLIEAVAQRHK---TLKVTAIKWDVEEtedgapPQWRFEETK 315
                                *********************8777**************************66...5******976555677999999****** PP

                       GRAS 163 erLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl..........s 235
                                ++L++ A+++g++++ + ++ +  +++++  + r   +E la n+++ l ++ +++  ++  + e+L+l k+l          +
  Pav_sc0001341.1_g120.1.mk 316 RQLQHHARSFGLNLKVEEIAIEdLVSEVKKANKRGGGREFLAFNCMVGLPHMRRRR--SRGLILEFLRLAKDLlsssanyktsN 397
                                *****************99443144555555545555**************98333..33345788888888733333222224 PP

                       GRAS 236 Pkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekW 315
                                  ++++ + +  a++ ns+sF   f   l +y al++s+e+++p++  e+r+++E +++++ +++    ++ + + ++ +l+ W
  Pav_sc0001341.1_g120.1.mk 398 RGIITFGDGDagAKLgNSSSFSSFFDGYLAHYQALLESIESNFPSHLaEARMVIELMFVAPYVSSQALFQKWNEVREECHLQPW 481
                                469***9999545669****************************98779**************999999999888888889999 PP

                       GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                      +G++  +ls +  ++ak ++ + +  g r+ ++ +++ l W++ pLv vS W+
  Pav_sc0001341.1_g120.1.mk 482 ------FGLEGKRLSRESLMEAKEMVGESS-YGVRIGQNGNEMALEWEGTPLVRVSTWT 533
                                ......8********************999.89*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    
MMQSELLPPF WPYLNVINSP LDQFEYNDVN MGSSDFSSPF MASDEFSETS SFPFATMFSG  60
DFEQLADCDH LLQVTSSVEE FPMDFGGFEP NYLIGEIEGM YACLERSEGS TLPSQQFSIE  120
GNDVWSPNSL MTSEASSMDV TSIQQSLTLP QEEMEIDNEL SIRHLLKAYG EAMEMGQREL  180
EEVILRCLSE KVNPLGQSLE RLAFNLCQEI DDQQGDYLKQ ESCKNFEAAL NLFYQSFPYG  240
RFAHYAANTA ILEAIPEDAE TVHIVDFDMG EGVQLSQLIE AVAQRHKTLK VTAIKWDVEE  300
TEDGAPPQWR FEETKRQLQH HARSFGLNLK VEEIAIEDLV SEVKKANKRG GGREFLAFNC  360
MVGLPHMRRR RSRGLILEFL RLAKDLLSSS ANYKTSNRGI ITFGDGDAGA KLGNSSSFSS  420
FFDGYLAHYQ ALLESIESNF PSHLAEARMV IELMFVAPYV SSQALFQKWN EVREECHLQP  480
WFGLEGKRLS RESLMEAKEM VGESSYGVRI GQNGNEMALE WEGTPLVRVS TWTNQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343349VKKANKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-19GRAS family protein