PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001340.1_g140.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 378aa MW: 40993.6 Da PI: 6.8765

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001340.1_g140.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.8	9.9e-35	26	147	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i+ l+++ Pav_sc0001340.1_g140.1.mk 26 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDRLAELppwhpitgvaannadpnqsn 109 79**************************************************************88777777766544443222 PP TCP 66 ..ssssaseceaesssssasnsssg....................kaaksaakskksqksaa 105 + +++++++ +++++a+ Pav_sc0001340.1_g140.1.mk 110 pnE---------------------MviaggteetescgynfhqlqRQMSENN---NNNNQAN 147 220.....................1222222222244444422212222221...1111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MGMKSAGGGA GGEIIQVQGG HIVRSTGRKD RHSKVYTAKG PRDRRVRLSA HTAIQFYDVQ 60 DRLGYDRPSK AVDWLIKKAK SSIDRLAELP PWHPITGVAA NNADPNQSNP NEMVIAGGTE 120 ETESCGYNFH QLQRQMSENN NNNNQANNVS SFNIPPSLDS DTIADTMKSF FPTSSAATSS 180 INFQSYPPDH DLISRTTNLN PSQDLGLSLH SFQDQGLNIH HTHSQQSQGD TNHNNDQIQT 240 LFAAGAGGST VGFDTSYQRM VAWSNQNRGV DGGFVFNSHT QALPQQAYAH AQGGTLQSSF 300 SPSVSARAWN DSSIFGTQQR TQQQQPMIHH SSIFGTRFAS DGGLPVFCIP TRIDAEEGDN 360 GGVSDRPSST SSPNSTHH

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MGMKSAGGGA GGEIIQVQGG HIVRSTGRKD RHSKVYTAKG PRDRRVRLSA HTAIQFYDVQ  60
DRLGYDRPSK AVDWLIKKAK SSIDRLAELP PWHPITGVAA NNADPNQSNP NEMVIAGGTE  120
ETESCGYNFH QLQRQMSENN NNNNQANNVS SFNIPPSLDS DTIADTMKSF FPTSSAATSS  180
INFQSYPPDH DLISRTTNLN PSQDLGLSLH SFQDQGLNIH HTHSQQSQGD TNHNNDQIQT  240
LFAAGAGGST VGFDTSYQRM VAWSNQNRGV DGGFVFNSHT QALPQQAYAH AQGGTLQSSF  300
SPSVSARAWN DSSIFGTQQR TQQQQPMIHH SSIFGTRFAS DGGLPVFCIP TRIDAEEGDN  360
GGVSDRPSST SSPNSTHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	3e-55	TCP family protein