PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001323.1_g1140.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 245aa MW: 28436.8 Da PI: 10.1414 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.5 | 1.7e-21 | 42 | 130 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 +fYn+YA +GF +r ++s k+++ei +++fvC k+g ++++++ +++r++ +r++Ckak++v k++ ++k+ ++ + Pav_sc0001323.1_g1140.1.br 42 NFYNRYAFVAGFGIRLHSSFWGKNKKEILRKEFVCCKQGAYRKDETR--ERKRQQGISRCNCKAKIVVVKTHgSKKYTISLFA 122 6**************************************99998877..8999999***********999999********** PP FAR1 83 leHnHela 90 + HnH+++ Pav_sc0001323.1_g1140.1.br 123 EGHNHKMT 130 *****986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MSGGSKSDDC VTANGMVYIP EVRNEETPAV GMKFDSLDLV YNFYNRYAFV AGFGIRLHSS 60 FWGKNKKEIL RKEFVCCKQG AYRKDETRER KRQQGISRCN CKAKIVVVKT HGSKKYTISL 120 FAEGHNHKMT ASERVHLLRS HRRISDSTKV LTKQLGSVNI PIHQKVSIFE VQSEGIDKID 180 FIKKDIYNLE CSVNGKLRNH NVQLATEYFM AEQKKNEAFY FKMAFYHKWS FTFTKLSRMV 240 LEVFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-19 | FAR1 family protein |