PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001313.1_g110.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 294aa    MW: 32025.5 Da    PI: 7.5534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001313.1_g110.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013150172123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C+ C++ Fs++  L  H++ H
  Pav_sc0001313.1_g110.1.br 150 FTCNFCKREFSTSQALGGHQNAH 172
                                89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MSEEPRVERL SPTSEASNTS AASDGPPPTQ KDGPENLDQK LKMKRKEKIV IDDSDDDDTQ  60
QPPPPLAVKS SSSLSQSSRL LLDLKLCNDD SAHGLGSSSS RLELSLFSPS NLGSSNAGSS  120
NPVSGYSQPN ETTDEKPRGS DDKRSQPRVF TCNFCKREFS TSQALGGHQN AHKQERALAK  180
RRQGGLENMG GVLGHSPFSY YNPYSSLSSP SLYGSFNRSL GVRMDSMIHK PSYPWSSTPS  240
FGRFGPGSGA WSSRADSLLN FQSTIDRLNL EGLPNPLLIG STWRAFMLML IVEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-16C2H2 family protein