PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001305.1_g550.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LSD

Protein Properties

Length: 104aa MW: 11178.8 Da PI: 6.7136

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001305.1_g550.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.7	3.3e-12	35	59	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL Y rGA++V+C++C+tV Pav_sc0001305.1_g550.1.mk 35 CGSCRRLLKYSRGARHVQCSCCQTV 59 ************************9 PP
2	zf-LSD1	47.3	3.3e-15	73	97	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+sVRC++C++V Pav_sc0001305.1_g550.1.mk 73 CGSCAVLLMYPYGASSVRCSSCQFV 97 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence
MESTVEVDKG PVPEHQSIAA AQPPPSPSEI AQMVCGSCRR LLKYSRGARH VQCSCCQTVN 60 FVLEADQVGQ VKCGSCAVLL MYPYGASSVR CSSCQFVTEI GEHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	6e-36	LSD family protein