PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001289.1_g020.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 26052.5 Da PI: 9.2081 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.1 | 1.7e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ Pav_sc0001289.1_g020.1.mk 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 24.6 | 1.1e-09 | 140 | 172 | 68 | 100 |
K-box 68 kKnellleqieelqkkekelqeenkaLrkklee 100 k+nell+++ie++qk+e +l+++n+ Lr+k++e Pav_sc0001289.1_g020.1.mk 140 KQNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 172 89****************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MAYENKSMSL DSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSSWF GANIDLAKKA YNTQAVMPPL AQPPISLTLP KYHVSYGHQE 120 ILPTRSCETA RSDREFAELK QNELLFAEIE YMQKREIDLH NNNQLLRAKI AENERSQQNI 180 NVMAGGGSYE IMQSQPYDSR NYFQVNALQP NHQYNSRQDP MALQLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-79 | MIKC_MADS family protein |