PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001267.1_g030.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 798aa MW: 91083.7 Da PI: 8.3376

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001267.1_g030.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	1.9e-20	31	116	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 k+Yn YA ++GF vr s++k+s+ +gei++++fvC k+g+++ + kk r+r rtgC akl v + + ++k+ v +++ Pav_sc0001267.1_g030.1.br 31 KMYNLYALKAGFGVRCSTTKTSSVTGEIIRKEFVCCKQGTTNITGKK-----RRRGWVRTGCLAKLAVLLPSlKNKYIVVAFKE 109 68**************************************99888.....9999************************ PP FAR1 84 eHnHela 90 eHnHe++ Pav_sc0001267.1_g030.1.br 110 EHNHEMT 116 ***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence
MESEAQVTPE VSVEFKPKLG LEFDSLEDAL KMYNLYALKA GFGVRCSTTK TSSVTGEIIR 60 KEFVCCKQGT TNITGKKRRR GWVRTGCLAK LAVLLPSLKN KYIVVAFKEE HNHEMTTYDQ 120 VHLLRCHRKV TESAKVYNAY LSKVNIPVHQ QLSILEVQAG GMENIGFLRK DVYNYQRDMR 180 AKVTGHDADL LNEHFLREQE KNASFYFKIE VDSEGRMGNV FWADARSRRA YGSFGDAVVF 240 DTTFNTNRYG MVFAPLIGVN NHRQTILFGC AFLTSESTEA FIWLFEEFKK AMPCGAPKMI 300 ITDQDAAIAK AIAVSLPTTF HRYCIWHIMN KLTEKTGIGE CFLELCNCIW DMDTKEEFDA 360 KWEEVITNNG LKEHTWLTSI HALRENWVPS YVKHVFSAGM SSSQRAESCH SFFKQYINKN 420 NTLMEFIVRF ERALASQRHK ELLADHVDQN EKPPTPFLTP MQLQMGGIYT RGILDIFERE 480 DFESLLCFFE VIKEDDTLCT YKVIERVQLG VTRTKEIVHE KDIDQAFCSC RGFEFRGIPC 540 RHIISFLRMK QVAYLPEKYI LKRWMKSAKA GVVFDKDGKE VKDNVDGCIL VKRSTLCKVA 600 ADLIDSALLY DEGSELLQKT FNDIRGKLIS LVSSRAPLEE ANNEGETSSV QVRIKDPNRE 660 NQKVVRKELK DNVRRLRDDI NVGALGAGRV IMIEGDVQDL GSRLHLLKQT LVLQLLRICS 720 PLKGRRTMKE ARATGRVTFA IGRLEADSKS GGKTYGDRSP IPDDRSLQSC CDVSLRVFNC 780 VFDGYRFPQD FRGLVGHF

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence

MESEAQVTPE VSVEFKPKLG LEFDSLEDAL KMYNLYALKA GFGVRCSTTK TSSVTGEIIR  60
KEFVCCKQGT TNITGKKRRR GWVRTGCLAK LAVLLPSLKN KYIVVAFKEE HNHEMTTYDQ  120
VHLLRCHRKV TESAKVYNAY LSKVNIPVHQ QLSILEVQAG GMENIGFLRK DVYNYQRDMR  180
AKVTGHDADL LNEHFLREQE KNASFYFKIE VDSEGRMGNV FWADARSRRA YGSFGDAVVF  240
DTTFNTNRYG MVFAPLIGVN NHRQTILFGC AFLTSESTEA FIWLFEEFKK AMPCGAPKMI  300
ITDQDAAIAK AIAVSLPTTF HRYCIWHIMN KLTEKTGIGE CFLELCNCIW DMDTKEEFDA  360
KWEEVITNNG LKEHTWLTSI HALRENWVPS YVKHVFSAGM SSSQRAESCH SFFKQYINKN  420
NTLMEFIVRF ERALASQRHK ELLADHVDQN EKPPTPFLTP MQLQMGGIYT RGILDIFERE  480
DFESLLCFFE VIKEDDTLCT YKVIERVQLG VTRTKEIVHE KDIDQAFCSC RGFEFRGIPC  540
RHIISFLRMK QVAYLPEKYI LKRWMKSAKA GVVFDKDGKE VKDNVDGCIL VKRSTLCKVA  600
ADLIDSALLY DEGSELLQKT FNDIRGKLIS LVSSRAPLEE ANNEGETSSV QVRIKDPNRE  660
NQKVVRKELK DNVRRLRDDI NVGALGAGRV IMIEGDVQDL GSRLHLLKQT LVLQLLRICS  720
PLKGRRTMKE ARATGRVTFA IGRLEADSKS GGKTYGDRSP IPDDRSLQSC CDVSLRVFNC  780
VFDGYRFPQD FRGLVGHF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	81	GKKRRRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-122	FAR1 family protein