PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001217.1_g140.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 417aa    MW: 47404 Da    PI: 9.2754
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001217.1_g140.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17796398
                               EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                         B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                                +l+ s++l+ ++l++p +f++++  +   s+  tl  ++g++W+v +  +k ++++++ +GW+eF +   +++g f++F+++g+s
  Pav_sc0001217.1_g140.1.mk  7 HKLILSSTLQAKQLMIPENFVKKFRDD--LSTVATLSVPDGNVWRVGI--KKADNKFWFHDGWQEFIERYTIRVGYFLTFRYEGHS 88
                               5677789999999***********877..88899999***********..**********************************99 PP

                               EE..EEEEE- CS
                         B3 89 efelvvkvfr 98
                               +f  +v++f+
  Pav_sc0001217.1_g140.1.mk 89 SF--TVHIFN 96
                               99..888885 PP
2B3598.4e-19303392497
                                E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                         B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                vl ps+  + ++++lp  fae++ +g++     ++l++++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l +
  Pav_sc0001217.1_g140.1.mk 303 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQSSDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFELLK 381
                                78899******************877743...5***************665555..66***********************988 PP

                                SSEE..EEEEE CS
                         B3  87 rsefelvvkvf 97 
                                 +e  l+v+vf
  Pav_sc0001217.1_g140.1.mk 382 MKEVVLKVTVF 392
                                77776777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MIRPCFHKLI LSSTLQAKQL MIPENFVKKF RDDLSTVATL SVPDGNVWRV GIKKADNKFW  60
FHDGWQEFIE RYTIRVGYFL TFRYEGHSSF TVHIFNLTAA EINYQPNALS STGGSVYRHQ  120
VFEEMEDDDS VEILGSSPKS IVTDSLRDKL FGDCANQLIP GKDYNPPALQ NLFNGSKPKN  180
CTNWPDAGNL HPSKGSGLQA GNQSSREIGV QFNVTELKKT VDEVKLRSSG EDIRSMKKTM  240
RKKRKLDPTV QESSSQHEKE VEIRFRFYES ASARKRTVTA EERERAINAA KTFEPVNPFC  300
RVVLRPSYLY RGCIMYLPSC FAEKNLNGVS GFIKLQSSDG RQWPVRCLYR GGRAKLSQGW  360
YEFTLENNLG EGDVCVFELL KMKEVVLKVT VFCVVEAAGF VNQPPQQNAS QAKMIRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-133B3 family protein