PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001217.1_g130.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 326aa    MW: 37325.9 Da    PI: 6.8858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001217.1_g130.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66e-1519107598
                                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--.TT-EEEEEE-S CS
                         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLk.egDfvvFkldg 86 
                                l     ++++++++p kf+++++++  e  tl+l+++s  sW+vk+  +k +++ +++++GW+eF ++n L  +++++++ ++g
  Pav_sc0001217.1_g130.1.mk  19 L---AGFNTDCVRIPPKFLKHMSKDLSERATLKLKNSSDSSWTVKV--KKIREGaVYFKNGWEEFIRDNSLGtDNEMLTIFYEG 97 
                                4...5567788********88855556778****************..5555555****************9889999999998 PP

                                SSEE..EEEEE- CS
                         B3  87 rsefelvvkvfr 98 
                                ++ f   +++f 
  Pav_sc0001217.1_g130.1.mk  98 KMHF--SIRIFG 107
                                8888..777776 PP
2B355.69.5e-182443251499
                                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                ++  +p  f +eh +++ ++++ +l++ +g++W+vk  + + ++++ +++GW++Fv+an+++ gD+++F+l +r   +++v+++
  Pav_sc0001217.1_g130.1.mk 244 KCQFIPTAFSREH-LPEGKGFKAILKNAEGEKWTVKG-IPNFPQSHNFSAGWSNFVSANQIRIGDTCIFELLSR--YQMTVHIL 323
                                44679********.567789*****************.5889999*************************8864..55599999 PP

                                -S CS
                         B3  98 rk 99 
                                rk
  Pav_sc0001217.1_g130.1.mk 324 RK 325
                                87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MVRNISKNEE KKHSFFKLLA GFNTDCVRIP PKFLKHMSKD LSERATLKLK NSSDSSWTVK  60
VKKIREGAVY FKNGWEEFIR DNSLGTDNEM LTIFYEGKMH FSIRIFGKNG IERTEELSSS  120
ESSELKEIKE EEEDSEDNTS EDLEADFTKI GSLHNNSTFA KNTTKRPRGR PRKYPVSSSK  180
PRPSKSCKVE SGEELSSSES IELNEVKEEE EDSEDSTSED LEGVEPEAFK SNFPYFKGII  240
NKTKCQFIPT AFSREHLPEG KGFKAILKNA EGEKWTVKGI PNFPQSHNFS AGWSNFVSAN  300
QIRIGDTCIF ELLSRYQMTV HILRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165173KRPRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.22e-12B3 family protein