PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001203.1_g080.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 520aa MW: 60337 Da PI: 7.0666

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001203.1_g080.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.4e-21	84	174	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 +fY++YA +GFs+r+s+ ++s + g ++ r++vCskeg+r+++ ++ ++ r++r+etr +C+a++ vk ++ + vtk++ Pav_sc0001203.1_g080.1.br 84 RFYCNYALAIGFSIRRSRLRRS-EGGVVMGRQWVCSKEGSRSKKWTNrDNMVRTPRKETRENCHATFAVKYCPkRDAYIVTKFV 166 5******************9.8999***********9988846677889*************999***** PP FAR1 83 leHnHela 90 +eH+H la Pav_sc0001203.1_g080.1.br 167 TEHSHRLA 174 ***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MDAEASKTNG IQGQNSVPNS EGYFAEAESL EETENAPSLQ ILDSRTEEIT EKSGQFEYDG 60 LNFQNMSIAD LAEREFAKFE EAERFYCNYA LAIGFSIRRS RLRRSEGGVV MGRQWVCSKE 120 GSRSKKWTNR DNMVRTPRKE TRENCHATFA VKYCPKRDAY IVTKFVTEHS HRLANSREVP 180 FLRSHRCVTE SNIAQSMSMR KASIKTNRTY DYMVDQAGGY MKVGFTSKDL YNRMDFEHRQ 240 VVLDGDAEAA ISYMNAKAIA DLEFFCMFSV DEENRLANFF WRDSQSLHDY CCFGDVVIFD 300 STYKTNVYDK PLVVFVGVNN HNATTVFGCA FLVDETADTY RWVLRTFLTS MKDNKLVSIV 360 TDGDEAMRVA IDEVFPDGHH RLCTWHIMRN VNTNVNNPKI VREFSYCVHG GLTPVVFEQH 420 WQQMIDTYDL KGDWIEMMYR KRKRWAEAYY SRHFFGGNTT TQRVEGMHKN LKDGIGRGMK 480 LVECIPWIER SLLRLRNENV KDDFDSNNSH PLLRTHLRSL

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MDAEASKTNG IQGQNSVPNS EGYFAEAESL EETENAPSLQ ILDSRTEEIT EKSGQFEYDG  60
LNFQNMSIAD LAEREFAKFE EAERFYCNYA LAIGFSIRRS RLRRSEGGVV MGRQWVCSKE  120
GSRSKKWTNR DNMVRTPRKE TRENCHATFA VKYCPKRDAY IVTKFVTEHS HRLANSREVP  180
FLRSHRCVTE SNIAQSMSMR KASIKTNRTY DYMVDQAGGY MKVGFTSKDL YNRMDFEHRQ  240
VVLDGDAEAA ISYMNAKAIA DLEFFCMFSV DEENRLANFF WRDSQSLHDY CCFGDVVIFD  300
STYKTNVYDK PLVVFVGVNN HNATTVFGCA FLVDETADTY RWVLRTFLTS MKDNKLVSIV  360
TDGDEAMRVA IDEVFPDGHH RLCTWHIMRN VNTNVNNPKI VREFSYCVHG GLTPVVFEQH  420
WQQMIDTYDL KGDWIEMMYR KRKRWAEAYY SRHFFGGNTT TQRVEGMHKN LKDGIGRGMK  480
LVECIPWIER SLLRLRNENV KDDFDSNNSH PLLRTHLRSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-75	FAR1 family protein