PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001196.1_g560.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 118aa    MW: 13698.7 Da    PI: 7.6065
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001196.1_g560.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.4e-108104296
                                EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEE..EETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltl..edesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegD 78 
                                +k+lt  dv+ +  lv+p + ++e+   +    + +++++   d +g ++ + +++r+++ r  ++ ++GW +F++ +gLk+gD
  Pav_sc0001196.1_g560.1.br   8 EKELTETDVGHK--LVVPVRWLDEMprfE---GGCREVQFgvLDDKGFQFPLCCSIRNGGYRkpVLQAEGWLRFANHKGLKVGD 86 
                                577878888865..9**********6652...4445555500555555555555555555445566669*************** PP

                                EEEEEE-SSSEE..EEEE CS
                         B3  79 fvvFkldgrsefelvvkv 96 
                                 ++F+ + ++ +e  ++v
  Pav_sc0001196.1_g560.1.br  87 KIIFRPQVDHFRETIFQV 104
                                *****6654555555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    
MEGAHELEKE LTETDVGHKL VVPVRWLDEM PRFEGGCREV QFGVLDDKGF QFPLCCSIRN  60
GGYRKPVLQA EGWLRFANHK GLKVGDKIIF RPQVDHFRET IFQVRAQRLN SHGHWVDI