PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001175.1_g200.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 449aa MW: 47341.1 Da PI: 9.0556

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001175.1_g200.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pav_sc0001175.1_g200.1.mk 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.4	0.00099	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Pav_sc0001175.1_g200.1.mk 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MPTDLDNSST ASGEASVSSS GNQTAPPKPT TKKKRNLPGM PDPDAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESARGHTQTP TQTQTEVNLN SESDPKAQNA NSPPQPPPQA PVPSQATTSS 240 VPSQSAGLLS SPMPTTQNPA MGNPDRTTDL APSSSVEPIS LGLSTSHGSS LFGPAGQERR 300 QYAPPPQPAM SATALLQKAA QMGAAATNAS LLRGFGIMSS SSASAQQENL QWSQRQAEPD 360 SASVAAGLGL ALPCDGGSGW KELMMGSPSM FGPKQTTLDL LGLGMAAGNS PSGGLSALIT 420 SIGGGLDVAA AAASFGGGEY SGKDLARST

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MPTDLDNSST ASGEASVSSS GNQTAPPKPT TKKKRNLPGM PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARGHTQTP TQTQTEVNLN SESDPKAQNA NSPPQPPPQA PVPSQATTSS  240
VPSQSAGLLS SPMPTTQNPA MGNPDRTTDL APSSSVEPIS LGLSTSHGSS LFGPAGQERR  300
QYAPPPQPAM SATALLQKAA QMGAAATNAS LLRGFGIMSS SSASAQQENL QWSQRQAEPD  360
SASVAAGLGL ALPCDGGSGW KELMMGSPSM FGPKQTTLDL LGLGMAAGNS PSGGLSALIT  420
SIGGGLDVAA AAASFGGGEY SGKDLARST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-143	C2H2 family protein