PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001171.1_g140.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 162aa    MW: 18936.5 Da    PI: 7.8379
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001171.1_g140.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.27.4e-1574159185
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 
                                ++Y +YAk +GF +rk+k  ++  +g++ +r+++Cskeg r+e+ ++  ++ r++++ tr +C  ++ v  ek ++++++t++e
  Pav_sc0001171.1_g140.1.br  74 EYYMSYAKGIGFFLRKDKFVRN-SEGKVCRRRWCCSKEGLRNEKFNDrPDRIRQPKPITRENCPTHFWVGYEKkRDTYVITNFE 156
                                69****************9998.6777**************9998875788999****************99989********* PP

                       FAR1  83 leH 85 
                                 +H
  Pav_sc0001171.1_g140.1.br 157 PHH 159
                                999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MDRGVETSKG GCSDSWYLGG CERLIHGVLA TESGHMLVEH PVSQSSDDND VDIIVPRKED  60
VMGKEFKTIE LVEEYYMSYA KGIGFFLRKD KFVRNSEGKV CRRRWCCSKE GLRNEKFNDR  120
PDRIRQPKPI TRENCPTHFW VGYEKKRDTY VITNFEPHHI MN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.15e-12FAR1 family protein