PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001169.1_g130.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 297aa MW: 32507.3 Da PI: 8.341

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001169.1_g130.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	117	139	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Pav_sc0001169.1_g130.1.mk 117 YQCKTCDRCFSSFQALGGHRASH 139 9***********99999998887 PP
2	zf-C2H2	12.6	0.0004	204	226	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H Pav_sc0001169.1_g130.1.mk 204 HECSVCGAEFTSGQALGGHMRRH 226 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MHKFCGTHRL ANQFSSSTER NRWKKVMGLL QSQPNLTPTA SSSSSAGHDH QHQVLVGPTE 60 TSPATSADQF TEISTEEEED MANCLILLAQ GNSTPKTQHP ILVHNNKASA SAGLYVYQCK 120 TCDRCFSSFQ ALGGHRASHK KPNKANMNIT QDNKKALSFV EEAEEYDRFN NTSTTLSLQI 180 SNRDYRASSS AATPVINSKA NKVHECSVCG AEFTSGQALG GHMRRHRTFM NTTTTATAAA 240 MSSPQPQSGS KRPRSILQLD LNLPAPEEEC LETKFPFGPK KEQVIVFSTS PLVGCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-53	C2H2 family protein