PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001124.1_g280.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 720aa    MW: 79970 Da    PI: 6.8604
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001124.1_g280.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.5e-20324378256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +k +++t+eq+++LeelF+++ +p+ ++r++L+++lgL+ rq+k+WFqN+R++ k
  Pav_sc0001124.1_g280.1.mk 324 KKYHRHTTEQIQRLEELFKECAHPDDNQRQQLSRELGLEPRQIKFWFQNKRTQTK 378
                                78999***********************************************998 PP
2START1281.2e-404596833206
                                HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHH.HHHHHHCCCGG.CT-TT CS
                      START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvla.llveellddke.qWdet 75 
                                a +a +el+k+ + +ep+W ks+      +n+d + ++f++ +       ++e +++sgvv   +a l +++     + +W   
  Pav_sc0001124.1_g280.1.mk 459 AASAIEELLKNFEINEPLWIKSPgdgrYLLNRDSYDKIFPRPNHfksssTRVESSKDSGVVSISAAhLKFKHNCLILQsKWEDL 542
                                567899*****************998878899999999988666899999************9999788998666666699999 PP

                                -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS
                      START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaell 148
                                ++     a+t++v++sg      g lqlm+ ++  lsplv  Rdf+f+R+++q + g+wvivdvS d +++   s+   R+ +l
  Pav_sc0001124.1_g280.1.mk 543 FPtiitNAKTIQVLESGmvgnqsGRLQLMYEQMHILSPLVLsRDFYFLRHCQQIEIGTWVIVDVSYDFPKET--SAFQTRSWRL 624
                                999999**********************************99***************************996..578999999* PP

                                SEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                      START 149 pSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                                pSg++i+++ ng skvtw+ehv++++++  h l+r l+ s +a ga +w  tlqr ce+
  Pav_sc0001124.1_g280.1.mk 625 PSGCVIKDMHNGCSKVTWIEHVEVDDKTQtHRLYRDLICSNVAYGAERWIVTLQRMCER 683
                                **************************9998***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    
MGLVFRSNSG SMRYFSTHSN SHSHSQCLPS PLLFQSSLPL RFNVHSMAVK PIKRVRCELQ  60
AKVNGALSAD SDPLFIDRQK ALEAAMNDIN SSFGKGSVTR LGSAGGALVE TFPSGCLTLD  120
LALGGGLPKG RIVEIFGPES SGKTTLALHA IAEVQKLGGN AMLVDAEHAF DPAYSKALGV  180
DVENLIVCQP DHGEMALEIA DRMCRSGAID LICVDSVSAL TPRAEIEVSR PYKQAEFEIV  240
FGEGVGKLGC ILDCAETMDV VVKKGSWYSY GDHRLGQGRD KALQYLRENP LLLDEIEKRM  300
ELPKGNAGVS GDEQEPSSSR RANKKYHRHT TEQIQRLEEL FKECAHPDDN QRQQLSRELG  360
LEPRQIKFWF QNKRTQTKHD KVASLLSKYI GKPISHIDSL ASAAGSSFEF SPGSSMNQGM  420
GSPPLSLNPT NPTVANNAAL AYQLIEIPEM EKTHMADTAA SAIEELLKNF EINEPLWIKS  480
PGDGRYLLNR DSYDKIFPRP NHFKSSSTRV ESSKDSGVVS ISAAHLKFKH NCLILQSKWE  540
DLFPTIITNA KTIQVLESGM VGNQSGRLQL MYEQMHILSP LVLSRDFYFL RHCQQIEIGT  600
WVIVDVSYDF PKETSAFQTR SWRLPSGCVI KDMHNGCSKV TWIEHVEVDD KTQTHRLYRD  660
LICSNVAYGA ERWIVTLQRM CERFDYSMDE VAPSCEFGGV HEVARISTGT HPGNCISIIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.18e-76HD-ZIP family protein