PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001110.1_g260.1.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LSD
Protein Properties Length: 374aa    MW: 41417.3 Da    PI: 9.1057
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001110.1_g260.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.11.3e-12227251125
                    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                C+gCr +L YPrGA++V+CalC+ +
  Pav_sc0001110.1_g260.1.mk 227 CSGCRSILLYPRGATNVCCALCNII 251
                                **********************976 PP

2zf-LSD142.11.4e-13266290125
                    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                CggCrtlL+ +rGA+sVRC++C+tV
  Pav_sc0001110.1_g260.1.mk 266 CGGCRTLLMHTRGATSVRCSCCHTV 290
                                ************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MDKYKNLLKV IAVQDLILAN PINPALSLDF LSRLSQKLHL NRGAVSFLRK YPHIFHIYHD  60
PMKSQTFCRL TDAAIQISKE EAEVINASLP LVVDRLVRLL SMSRSRMLPL RAVLKVGREL  120
GLPDDFEDSV ISRNSHLFQL CDAHEPNTHN LKLFDVIPDK FTAAVENWRG KRHTVFLREA  180
YERGCLIHPN PVYHARRKLL DLVVLGRHGL LTDELRSIAS MQSQLVCSGC RSILLYPRGA  240
TNVCCALCNI ITPVPPPGTE MAQLICGGCR TLLMHTRGAT SVRCSCCHTV NLAPEGDHAT  300
LMFSIVNNLR MTNMRVPIPV HRPNGTANSG MAPSTSAAMP HSQSQTVVVE NPMSVDESGK  360
LVTNVVVGVT TGKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-39LSD family protein