PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001110.1_g260.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LSD | ||||||||
Protein Properties | Length: 374aa MW: 41417.3 Da PI: 9.1057 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.1 | 1.3e-12 | 227 | 251 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ + Pav_sc0001110.1_g260.1.mk 227 CSGCRSILLYPRGATNVCCALCNII 251 **********************976 PP | |||||||
2 | zf-LSD1 | 42.1 | 1.4e-13 | 266 | 290 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRC++C+tV Pav_sc0001110.1_g260.1.mk 266 CGGCRTLLMHTRGATSVRCSCCHTV 290 ************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence |
MDKYKNLLKV IAVQDLILAN PINPALSLDF LSRLSQKLHL NRGAVSFLRK YPHIFHIYHD 60 PMKSQTFCRL TDAAIQISKE EAEVINASLP LVVDRLVRLL SMSRSRMLPL RAVLKVGREL 120 GLPDDFEDSV ISRNSHLFQL CDAHEPNTHN LKLFDVIPDK FTAAVENWRG KRHTVFLREA 180 YERGCLIHPN PVYHARRKLL DLVVLGRHGL LTDELRSIAS MQSQLVCSGC RSILLYPRGA 240 TNVCCALCNI ITPVPPPGTE MAQLICGGCR TLLMHTRGAT SVRCSCCHTV NLAPEGDHAT 300 LMFSIVNNLR MTNMRVPIPV HRPNGTANSG MAPSTSAAMP HSQSQTVVVE NPMSVDESGK 360 LVTNVVVGVT TGKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 1e-39 | LSD family protein |