PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001107.1_g240.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 342aa MW: 38430.9 Da PI: 5.4004

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001107.1_g240.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.8	2.6e-27	43	136	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 rWt+qe+l+Li+++r+ e+r + + +++p+W++vs +++++g++r+p+qC+++w+nl++++kki+e+e +r++e++ Pav_sc0001107.1_g240.1.mk 43 RWTRQEILVLINGKRYAESRGGGRTprsdfgsgQAEPKWAAVSTYCKKHGVNRGPVQCRKRWSNLAGDFKKIREWEVQRKDETE 126 8*****************9954334455566***********************************************9 PP trihelix 77 stcpyfdqle 86 s +++ ++l+ Pav_sc0001107.1_g240.1.mk 127 SFWVMRNDLR 136 999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MLMALEQQVS LNPVDGETNG VDGRHPTSAE TGDDASKAPR LPRWTRQEIL VLINGKRYAE 60 SRGGGRTPRS DFGSGQAEPK WAAVSTYCKK HGVNRGPVQC RKRWSNLAGD FKKIREWEVQ 120 RKDETESFWV MRNDLRRERK LPGFFDKEVY DIMEAVPGAP ISLALPGPSR VESEEVKEEG 180 MAEEAENLFD SIQRPTEDGL FSDDESGRSP DKEVRFKEGP GSTTVISGPF PISEKQYKPI 240 PQGCQGQGAA DQKEPASIPE IGSTSQDRKR KRFTIDVDEE TSNMQNQLID VMERNGKVLS 300 DYLHAQNSHS QLDREQRKEH SDSLIAVLNK LADAFMRIAE KL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MLMALEQQVS LNPVDGETNG VDGRHPTSAE TGDDASKAPR LPRWTRQEIL VLINGKRYAE  60
SRGGGRTPRS DFGSGQAEPK WAAVSTYCKK HGVNRGPVQC RKRWSNLAGD FKKIREWEVQ  120
RKDETESFWV MRNDLRRERK LPGFFDKEVY DIMEAVPGAP ISLALPGPSR VESEEVKEEG  180
MAEEAENLFD SIQRPTEDGL FSDDESGRSP DKEVRFKEGP GSTTVISGPF PISEKQYKPI  240
PQGCQGQGAA DQKEPASIPE IGSTSQDRKR KRFTIDVDEE TSNMQNQLID VMERNGKVLS  300
DYLHAQNSHS QLDREQRKEH SDSLIAVLNK LADAFMRIAE KL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-98	Trihelix family protein