PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001102.1_g590.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 319aa MW: 35694.2 Da PI: 5.1818

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001102.1_g590.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00082	7	27	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k+F + + H+r+H Pav_sc0001102.1_g590.1.mk 7 CKICNKRFANGKAMGGHMRSH 27 *******************99 PP
2	zf-C2H2	13.1	0.00028	182	204	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H Pav_sc0001102.1_g590.1.mk 182 YKCETCNKAFRSYQALGGHRASH 204 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MEKHRICKIC NKRFANGKAM GGHMRSHLAK LPLPAKPQSP QSQQQQQQQQ LSNSPELSPP 60 LSSTNRAMHS SPSLDSAIHD GDSDTESHPR NPTRRRSKRR RKVIGKAAEA ALEAEQVSSV 120 SDAFSTEDVA RCLIMLSMDK WGKWEKAKLK KEVDESVDED EDEDEDESAF RAQTGALTQG 180 KYKCETCNKA FRSYQALGGH RASHKKIIKT QVFDVEDDDD DDFEEEEEDV IGNNGNSGNL 240 VVDQQRTFEC SFCFKQFDSG QALGGHKKVH YYNNLTHNAR NVSSSSTNFV DNLVIDLNLP 300 APEEEDGELS QVEFSTVSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-35	C2H2 family protein