PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001080.1_g410.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 321aa    MW: 35805 Da    PI: 6.1877
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001080.1_g410.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.96.1e-21125222195
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                                f+k+l++sdv++++r++lpkk ae+h   ++++e++ +++ d +g  +W++k+++  +++s++yvl+ ++ eFv+a+gL+ gDf
  Pav_sc0001080.1_g410.1.mk 125 FQKELKNSDVSSLRRMILPKKAAEAHlpALESKEGIPISMDDIDGlHVWSFKYRFwpNNNSRMYVLE-NTGEFVNAHGLQLGDF 207
                                99**************************666668889********9*******9989999999***9.**************** PP

                                EEEEE-SSSEE..EEE CS
                         B3  80 vvFkldgrsefelvvk 95 
                                ++ ++d+ +++++v++
  Pav_sc0001080.1_g410.1.mk 208 IMVYHDN-QNQNYVIQ 222
                                ****875.56556665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MMMDQAAASA AAGLIHHEKT EACGLRAGVE AELGLVTAKG DKTSFHGSDR SGSIHDHDDL  60
VHAVTSFGVH RKKRMTRQRR SSIINLHHLT FASSTTTSHV LPSLQPPSTL PPARVIDPTR  120
LRFLFQKELK NSDVSSLRRM ILPKKAAEAH LPALESKEGI PISMDDIDGL HVWSFKYRFW  180
PNNNSRMYVL ENTGEFVNAH GLQLGDFIMV YHDNQNQNYV IQAKKASDQD HVYGDISTMN  240
NGVNDLFLDE SEANKSSSFY MPTMAMDEDT TAGMSFVYDT TTFSNDSLLD FFGGSMTNYS  300
RNGPLHESFG SVENLSLDDY Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-95B3 family protein