PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001080.1_g350.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 543aa MW: 59508.6 Da PI: 5.3698

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001080.1_g350.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	360	402	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L Pav_sc0001080.1_g350.1.mk 360 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 402 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MLPMSSSAVW MGGDEDDAAS WTRSSSNNNN NNNNNNEGEP KNEQQSSLGA SFYNFKSMLE 60 GDWYMNNVLN PTHHQDLHSL PNHRQPDIRD IACFSENTLM LQPMDSSASC SPSQAFSLDP 120 SPPQHLFPPK SCFSSLLNVV STNPFDNGFD LGCDSGFLSS FQGNQPSNSS ALMGFTALNS 180 QSQMGTPELS SSAEFPTTRL LPAPNNDTEL DGDFSLTGFQ GFDGSGGAQL LNRAKPLRPL 240 HVFPPVGAHP TLFQKRAALR QNSGGDGTDK LGNLEISGPR YGGVLESLER KRKKNVEGEM 300 EEGSMDVSGL NYDSDEFNEY SQVEENVKNA GSNSNANSTV TGVDGDRKGK KNGLPAKNLM 360 AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESAPPGS 420 LLPPSSSFQP LTPIPPTLPC RVKEELCPSS FPSPKGQPAK VEVRVREGRT VNIHMFCARR 480 PGLLLSAMRA LDNLGLDIQQ AVISCFNGFA LDVFRAEQCR ESQFLPEQIK AVLLDSAGFH 540 EMM

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MLPMSSSAVW MGGDEDDAAS WTRSSSNNNN NNNNNNEGEP KNEQQSSLGA SFYNFKSMLE  60
GDWYMNNVLN PTHHQDLHSL PNHRQPDIRD IACFSENTLM LQPMDSSASC SPSQAFSLDP  120
SPPQHLFPPK SCFSSLLNVV STNPFDNGFD LGCDSGFLSS FQGNQPSNSS ALMGFTALNS  180
QSQMGTPELS SSAEFPTTRL LPAPNNDTEL DGDFSLTGFQ GFDGSGGAQL LNRAKPLRPL  240
HVFPPVGAHP TLFQKRAALR QNSGGDGTDK LGNLEISGPR YGGVLESLER KRKKNVEGEM  300
EEGSMDVSGL NYDSDEFNEY SQVEENVKNA GSNSNANSTV TGVDGDRKGK KNGLPAKNLM  360
AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESAPPGS  420
LLPPSSSFQP LTPIPPTLPC RVKEELCPSS FPSPKGQPAK VEVRVREGRT VNIHMFCARR  480
PGLLLSAMRA LDNLGLDIQQ AVISCFNGFA LDVFRAEQCR ESQFLPEQIK AVLLDSAGFH  540
EMM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	290	294	RKRKK
2	362	369	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-144	bHLH family protein